Clone UFO02583 Report

Search the DGRC for UFO02583

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:25
Well:83
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptMED30-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02583.5prime Sequence

925 bp (807 high quality bases) assembled on 2009-01-14

> UFO02583.5prime
CAGTCGACATGTGGAAATACGGTCAAAACCAGGGTAATCAGGGACCATCG
AGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATGGGTGGATT
TGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCCTCAACATC
AACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTAGCATGCAG
ATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCCGGCATGTC
TCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGATGCAGCAGC
AAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAATGGGCGGT
GGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAGCAACAGCA
GCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCAACAGCAAC
TCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCAGCAACAAT
ATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAACATTGTGCA
GCTGTCCCGTCTCGGTCAGGAAACGGTGCACGATATCGCCTCGCGCTTCC
AGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGCACAGGGAA
AACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATCCGGCTGCT
CTTCAAGAGGGTGCGCATCATCTACGAGGAAGTGCAACGACGCCGGAATG
GATTACATGAGCGCCGAGAAGTCTGATTCCCTACCGCGATGAGCCGGAAC
CGAAAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTGCAGGAA
CATGACTCATAGAGACCGTCAAGCTGAAGACGCAGCTACCCGAGATCCTC
GATCGACCCGCCATCTTCATCTGGG

UFO02583.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1103 CG17183-RA 80..1001 9..925 4280 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 653089..654010 925..9 4130 97.7 Minus
Blast to na_te.dros performed 2014-11-28 23:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 122..497 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2674 112..457 144 53.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2682 107..432 132 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 108..450 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 102..306 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 108..167 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 140..200 117 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 129..301 117 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6802..6846 122..166 108 71.1 Plus

UFO02583.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:11 Download gff for UFO02583.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 189..1090 9..905 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:25 Download gff for UFO02583.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..981 9..905 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:49 Download gff for UFO02583.5prime
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 80..981 9..905 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:49 Download gff for UFO02583.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 653109..654010 9..905 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:25 Download gff for UFO02583.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 653109..654010 9..905 98   Minus