UFO02584.5prime Sequence
1004 bp (882 high quality bases) assembled on 2009-01-14
> UFO02584.5prime
CAGTCGACATGTCCTACGCGTACTTGTTCAAATACATCATTATCGGAGAC
ACAGGCGTGGGCAAGTCCTGTCTGCTGCTCCAGTTCACGGACAAGCGATT
CCAGCCGGTGCACGACCTGACCATTGGCGTGGAGTTCGGAGCACGCATGA
TCACCATCGACGGCAAGCAGATCAAGCTTCAAATCTGGGACACGGCTGGG
CAGGAGGCTTTCAGATCTATCACACGCTCTTATTACCGCGGAGCTGCTGG
CGCCTTGCTGGTGTACGACATCACGCGACGGGAGACCTTCAACCACCTGA
CCACCTGGCTGGAGGATGCGCGTCAGCACTCGAACTCGAACATGGTCATT
ATGCTGATAGGCAACAAGAGCGATTTGGATTCGCGGCGTGAGGTGAAGAA
AGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGACTGGTCTTCATGGAGA
CTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGCGTTCATAAATACGGCC
AAAGAGATTTACGAGAAGATCCAGGAAGGTGTCTTCGACATCAACAATGA
GGCAAACGGCATTAAGATCGGCCAACAGCACTCCCCCACAAACCCGTCGC
TCCCAGGAGCCGGAGGAGCAGCTGGAGCAGCAAACAGTGGCTGCTGCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGAATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCAGATGGAGTTCTGAGTCATTACTGGATCTATC
AACAGGAGTCCAGCGAGCTCGATATCAAATTACCCCCCCGCCTGCCACTC
ATCGCAGTACTGTTGTAATCATAGCATTCTGCGACTGAGCCATCCAAACG
CATTATGACTGAATCGCCAGCGGCATCAGACCTTGTCGCCTGGTATATAT
TGCC
UFO02584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab2-RB | 1087 | CG3269-RB | 144..784 | 7..647 | 3205 | 100 | Plus |
| Rab2-RA | 1712 | CG3269-RA | 144..784 | 7..647 | 3205 | 100 | Plus |
| Rab14-RD | 878 | CG4212-RD | 105..343 | 30..268 | 310 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6698047..6698386 | 213..552 | 1700 | 100 | Plus |
| 2R | 25286936 | 2R | 6697413..6697575 | 52..214 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6698444..6698541 | 550..647 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 6696882..6696940 | 7..65 | 250 | 94.9 | Plus |
| 2L | 23513712 | 2L | 14357540..14357688 | 120..268 | 250 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:14:23 has no hits.
UFO02584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:10 Download gff for
UFO02584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 161..801 | 7..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:59 Download gff for
UFO02584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..784 | 7..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:11 Download gff for
UFO02584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..784 | 7..647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:11 Download gff for
UFO02584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6698446..6698541 | 552..647 | 100 | == | Plus |
| 2R | 6696882..6696929 | 7..54 | 100 | -> | Plus |
| 2R | 6697416..6697575 | 55..214 | 100 | -> | Plus |
| 2R | 6698049..6698385 | 215..551 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:59 Download gff for
UFO02584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2584387..2584434 | 7..54 | 100 | -> | Plus |
| arm_2R | 2584921..2585080 | 55..214 | 100 | -> | Plus |
| arm_2R | 2585554..2585890 | 215..551 | 100 | -> | Plus |
| arm_2R | 2585951..2586046 | 552..647 | 100 | == | Plus |
