UFO02585.5prime Sequence
961 bp (819 high quality bases) assembled on 2009-01-14
> UFO02585.5prime
CAGTCGACATGATCCGGCCCTTCGTCACGTTGCTCTACTTCCTGCTGACC
AGTTCGTCCATCGTGTTCACAGCCTGTGTGAATAATGTGACAGGCACCAG
TTCACCCGGACCCGGACCCAGTACCTCGCTGACCAGCGGGCACATTCACC
GCACGGCGGCAGCCATCGAAAGGGTGAACAAACTGTGGTGCTTTGCCTGC
CACACGATGGATGATGGGGAGGCCTGCGTGGATGTGGCGGTCCGGAACGA
TTCCGCACTGATGAAAAAGTGCCAGGGCGAGGAGTTCATCTGCATGGTCA
AGCGGTTCTCGTACACCACCAGCACGGAGAACTCCACCAGTTCGCCCAAG
ATGTGGTCCCTGGACCGGCGATGTACTGCCAACTGTGAGCCCGGCTGCAT
CATCATTGGCGAGCGGACCAAGCTCTATTCCTGCACTTCCTGCTGCGAGG
AGTCCTTTTGTAATACGGGTCGAGGAGCTGCATCCGGGATCTTCCATCGC
GAGGACACGGGCATCGGCACACGGCTGTTTTGGCTGGCCGCCCCCTTTCT
GGTCAACATGTCGCTGGTCCTGTACAAACGGCACGCCGGCCACGTTCTCC
TCAAGCTGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGGATGGAGTTCTGAGGT
CATTACTGGATTTTATCAACAGGAGTCCAAGCGAGCTCGATTATCAAATT
ACGCCCCGCCTTGCCACTCATCGCAGTACTTTTTGAATTCATTAGCATTC
TGCCGACATGGAAGCATCCAAACGGCATGATGAACCTGAATCGCCAGCGC
ATCAGCACCTT
UFO02585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3955-RA | 997 | CG3955-RA | 115..717 | 9..611 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13128195..13128510 | 611..296 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 13128577..13128788 | 298..87 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 13128860..13128938 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:43 has no hits.
UFO02585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:00 Download gff for
UFO02585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3955-RA | 110..728 | 1..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:07 Download gff for
UFO02585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3955-RA | 108..726 | 1..621 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:59 Download gff for
UFO02585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3955-RA | 108..726 | 1..621 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:59 Download gff for
UFO02585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13128186..13128509 | 297..621 | 98 | <- | Minus |
| 2R | 13128579..13128787 | 88..296 | 100 | <- | Minus |
| 2R | 13128860..13128942 | 1..87 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:07 Download gff for
UFO02585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9015691..9016014 | 297..621 | 98 | <- | Minus |
| arm_2R | 9016084..9016292 | 88..296 | 100 | <- | Minus |
| arm_2R | 9016365..9016447 | 1..87 | 95 | | Minus |
