UFO02587.5prime Sequence
958 bp (829 high quality bases) assembled on 2009-01-14
> UFO02587.5prime
CAGTCGACATGGCTGATCGTCCGTGTGCTGGAAACATTCTCCGCATCGCC
GGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGGCGGCTGAC
CAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCCGTCCTTCA
AGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGTACGCGGGA
ATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGCTTCGCCGG
CGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCTGGCCTTGA
ACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCAAGGGCGGC
CTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGCGGCGTTCT
GTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACCCTACGTCG
CCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGAAGCTGAAC
CCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCTAGCAGCCA
CGCTAAGTCGAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATTCAAATTA
CGCCCCGCCTGCCACTCATCGCAGTACTGTGTATCATAGCATTCTGCGAC
TGGAGCCATCACAACGCATGATGACTGATCGCAGCGGCATCAGCACCTTG
TCGCCTTGGCTTATATTTGCCATGGTGAACGGGGCGAAAAGGTGCATTGC
ACGTTAAT
UFO02587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2789-RA | 853 | CG2789-RA | 88..642 | 9..563 | 2775 | 100 | Plus |
| rempA-RC | 5308 | CG11838-RC | 273..612 | 348..9 | 1700 | 100 | Minus |
| rempA-RC | 5308 | CG11838-RC | 1..214 | 561..348 | 1070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 559699..560038 | 9..348 | 1700 | 100 | Plus |
| 2L | 23513712 | 2L | 560097..560312 | 348..563 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:44 has no hits.
UFO02587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:58 Download gff for
UFO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-RA | 89..648 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:45 Download gff for
UFO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-RA | 88..647 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:32 Download gff for
UFO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-RA | 88..647 | 9..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:32 Download gff for
UFO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 559699..560037 | 9..347 | 100 | -> | Plus |
| 2L | 560097..560317 | 348..569 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:45 Download gff for
UFO02587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 559699..560037 | 9..347 | 100 | -> | Plus |
| arm_2L | 560097..560317 | 348..569 | 99 | == | Plus |
