UFO02588.5prime Sequence
955 bp (809 high quality bases) assembled on 2009-01-14
> UFO02588.5prime
CAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAGGAGCCGGA
CTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACGGTCGTGCA
GAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGCCCTTTGGG
ACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTCCACTGCGA
AACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTTGAGAAGGC
GAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGGCGAGTATC
TGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGCGCGGCCGC
AAGCAGGCGGAGTTTACTGGGAAACGGCTCTGCGAGCTGGGCATCAAGTG
GGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGGAGACTTCCGATA
TTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGAACTGTGCC
TTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTCGGCCACTG
GAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCATAGAGGCCG
GCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGAAAGGAGAG
CTATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTTGTCTGCC
GAGCCCTGCAGTTCCCCGCCGAGGGTTGGCTACGGATTAACATTAATCCC
GCTTCATCACCTGCTGACCATCAGTCCATCCGCAACGTGTTCCATCAGTA
CCTGGGGCGACTCCGGCTTTATGCCCGCCGAGCTGCTACATCCGCATACC
GCGCGGACGTCAAACGGTGGTGCAGCTTTCTAGAACATCGTGGCGCGCGG
GCCCAGTAGTGCTAATCTAAATCTAATCTAATCTATCCACTAGCTAAGGA
ATTCT
UFO02588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgam5-RA | 1100 | CG14816-RA | 36..893 | 9..864 | 4015 | 98.5 | Plus |
| Pgam5-RB | 1097 | CG14816-RB | 36..890 | 9..864 | 3960 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1872973..1873530 | 566..9 | 2790 | 100 | Minus |
| X | 23542271 | X | 1872635..1872906 | 837..567 | 1030 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:57 has no hits.
UFO02588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:57 Download gff for
UFO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14816-RA | 1..873 | 5..871 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:22 Download gff for
UFO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-RA | 36..901 | 9..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:36 Download gff for
UFO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-RA | 36..901 | 9..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:36 Download gff for
UFO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1872599..1872906 | 567..871 | 94 | <- | Minus |
| X | 1872973..1873530 | 9..566 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:22 Download gff for
UFO02588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1766632..1766939 | 567..871 | 94 | <- | Minus |
| arm_X | 1767006..1767563 | 9..566 | 100 | | Minus |
