UFO02589.5prime Sequence
1057 bp (957 high quality bases) assembled on 2009-01-14
> UFO02589.5prime
CAGTCGACATGGTTAACATCCACGGTGGCACTCGGATGATGGTGAACCGT
TGCATCGAGCTCCTCCGTGCGCGGATCGAATGCGCCTCAACGCGTCACAT
TGCCAGGCGTTCCCAGCGGCCCAGAGTGGGCAGCCAATACCTGCCAGACG
ATCAGATACTCAGGGAGCGGGAGAAAGCGGATGTGTACAAGAAGAACAAG
CGACGCTCCATGTGGGAGCAGGACGAGGGCCACGGACGCATCTCGGTCGG
GGACGATCAGGAACGCTTCGATAACGAGCAGTACCATCCGCGCGAACTGG
AGAAGCGCAAGTACGAGTGCACCTGGGTTAATTTCCCGGACAGTGTGGCG
ACCAAACGAAATCGTAGACGGGACTTTCTGGAGTCGATGGAAACTGAGGC
TCCTCGACGCCGCCGAGCCCAGGAAGAAAGACCGAGTACGGCAAAGCCAT
GTGACGACGAGGCCCGTGCCTTTATCAACCAATGGGACACCAATGCGGCG
ATGATCCAACGCAACAAATTTGCTCGTGCCACCGATAGCTGTCCACCACC
CATTGTATCTCTCCGGTTGTCAAACGCCTACAGCACCCGAAAACGTCAGT
TCTTATTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGCATTCTGCGACA
TGCAGCATCACAAACGCATGATGACTGATCGGCAGCGCATCAGCACTGTC
GCTGCGTATATATTTGGCCATGTGAACGGGGCGAGAGTGTCATATGACAG
GTATCGAACTGGTGACCACCAGATGCTGAACGAAACTTTTCCATACTAGG
AATTGCA
UFO02589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5762-RA | 921 | CG5762-RA | 133..732 | 9..608 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24361137..24361551 | 423..9 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 24360894..24361082 | 608..420 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:49:50 has no hits.
UFO02589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:56 Download gff for
UFO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 133..747 | 1..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:25 Download gff for
UFO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 127..741 | 1..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:09 Download gff for
UFO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5762-RA | 127..741 | 1..617 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:09 Download gff for
UFO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24360884..24361079 | 423..617 | 97 | <- | Minus |
| 3R | 24361138..24361556 | 1..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:25 Download gff for
UFO02589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20186606..20186801 | 423..617 | 97 | <- | Minus |
| arm_3R | 20186860..20187278 | 1..422 | 99 | | Minus |
