UFO02595.5prime Sequence
778 bp (689 high quality bases) assembled on 2009-01-14
> UFO02595.5prime
CAGTCGACATGTTAGCCTCAGTTGCCGCCCGTCTGGCGCTGTTCGCTGTG
ATAAGCACCCAGAGTCTGCAGCTCCTCCAGGCTGCTCCGTTCCCAGGCAT
CGAGAATGCTGCCTTCACCAGTGACGATTTATTGGCCGAGGAATCGTCGC
CCGTTGTTAGCCAGGTCCACGTCCAGCACAATCGGCATCGTCGCCATCAC
GAGGATGGCAATTACCATGGGCACAGACACCATAAGCGGCACTGGGATCA
CCATTTTCCGGGTCCAGACTGCCATCACCCTGCCAGATTCGGGTTTGGAT
TTGAGCATGGAGGACCACCTCCCCAAGGCCACCACCACAGATTCGAGCCA
CATGACTTCCAACCGTTTCCAAATGCCTTTGGACCACCGGAATATGAGGA
GCACCGGCGGCCATTTGAAGCGCCACTGGAGCCTTTTGAAGAAAATAAAG
GGGGAATCAAGGAGCTTACAAAGCAAGCGAGCTCAAGCAGCTTAGCTCCA
CCACCCGCAGCTCCAGTAACGCCTTCCTCACGCACCAGCACCACCACCAC
GACAACCACCAGCACCACCAGATCGACTACCTTGGCACCCACCTCTTCCA
GCACCGAAGAGGCACCCTTGGCCATCGACATACGCATCGGCGCAAGCTTT
CTAGAACCATTCGTTTGGCCCCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCAATCCCACACTAGCCTAGAGATCCTGGTCCATGA
ACTATGCTTGATTCCCACCAATAAAACC
UFO02595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9312-RA | 807 | CG9312-RA | 105..737 | 9..641 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13766106..13766437 | 110..441 | 1660 | 100 | Plus |
| 3R | 32079331 | 3R | 13766832..13767033 | 440..641 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 13765945..13766021 | 33..109 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:13:02 has no hits.
UFO02595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:01 Download gff for
UFO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9312-RA | 82..718 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:28 Download gff for
UFO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9312-RA | 101..737 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:30 Download gff for
UFO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9312-RA | 101..737 | 1..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:30 Download gff for
UFO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13765945..13766021 | 33..109 | 100 | -> | Plus |
| 3R | 13766106..13766437 | 110..441 | 100 | -> | Plus |
| 3R | 13766834..13767033 | 442..641 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:28 Download gff for
UFO02595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9591667..9591743 | 33..109 | 100 | -> | Plus |
| arm_3R | 9591828..9592159 | 110..441 | 100 | -> | Plus |
| arm_3R | 9592556..9592755 | 442..641 | 100 | == | Plus |
