UFO02603.5prime Sequence
873 bp (739 high quality bases) assembled on 2009-01-14
> UFO02603.5prime
CAGTCGACATGGACGAATTTAGAGTACCCAAAAAGGTTAACCGTAACGTT
TTCAAGGCCATTAGCATTCTTCAATCTTCCCGAACCGATTTTGTCTGCGC
TAATGCAATCGTCGACCAGGTAAAGTTCCAAATGCGGAACCGCATTCCGG
TCGAGCATATAGATGAGGCCATAAAACAGTCGCTGGCCAACTTGACCATG
CTGGGCATAGTGCGGCGTCTGGGATCGTCTAAGTATTCGCTTAGCACCAT
AGTGTATGGCCGGTTGGGAATGCCCAATCCCATTGCACATCCGCCGGGCA
ATCCTGGTAGACCACATCGGCGAGCTGCGCAGAATGCGCGTCAAAAGCGA
CCTGTCGGGCGCTTGGATCCTTGGAAATCGGTCAGCAAGATCTTGAGTGA
GGACTCTCTGTCTGGAACTGAGATGACCAAGATGCGCAAGCGGATGCGCA
CCAACACAAAGCGCGTTGTCAAGAAGAAACGAATCCCCAACCGTCGACTA
TCTCGAGCCAGGAAGTATAAAGAAACAGAAATGGCCACCACCAGTATCGA
CCTAAGATGTTCAGAAAGTCGTTTGGGACTAGACATAACGTGCAAATACT
ATTCGGATCACCGGGATGGACCTATACCAAACCCATTCAAAGTACTTTGG
TGTTGCCCGATGCACCATTAGATTGATCAAAAGCGAATGATCCTGAAACC
CCGAAAACAACAGTTCTTTCGGAATAGCAGCAGCCACTTCTGTGACGACG
TAAGGATTGTGGTGAAGATGAAGGAGGAAGATCTCAACTTCAATATGCAC
ATTGGCGCTGTGCCCATCGGTTGGGATAGCCAGCTTACCTACCCTGAGAT
CAGTTGGAAATGCCTCGGTCCGA
UFO02603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5538-RA | 1328 | CG5538-RA | 85..937 | 9..839 | 3640 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12448132..12448545 | 338..746 | 1745 | 98.1 | Plus |
| 3R | 32079331 | 3R | 12447737..12448066 | 9..338 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:08 has no hits.
UFO02603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:09 Download gff for
UFO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..852 | 1..767 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:54 Download gff for
UFO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..852 | 1..767 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:53 Download gff for
UFO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5538-RA | 79..852 | 1..767 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:53 Download gff for
UFO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12447731..12448066 | 1..338 | 98 | -> | Plus |
| 3R | 12448133..12448570 | 339..767 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:54 Download gff for
UFO02603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8273453..8273788 | 1..338 | 98 | -> | Plus |
| arm_3R | 8273855..8274292 | 339..767 | 97 | | Plus |
