UFO02605.5prime Sequence
1083 bp (950 high quality bases) assembled on 2009-01-14
> UFO02605.5prime
CAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGATACAGTAC
TTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCGGACTATGC
ACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGATCTGCCAA
TGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGGTTTTGACA
TGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAACTCCCACAT
GGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCCATTTGGAG
CCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACACAAGATATG
AAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTCAAGAGAAG
TGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGCGGATGAGG
AAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTGAAGATTTC
CGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCTTCACCCGA
TGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCGTGTATATT
TCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGCCCAATACT
GCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAGTTTCGTAG
GAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCATTGGCGATG
TAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGAGCAATGTG
GTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCTCTAGATGT
GACTTTGAAGAGTTTGAGGCTTACCTCCACAAATGGTGTGCCGACGTGGG
GTGGTGCATCGAGATCACTTACGAACAGAAGCACCTAAGTTCCCGCCCAA
CGCATCGATGGAGTAATCCCTTCTGGCTTGCTTTCAGAAGCTACCGATGG
AATGCACTATCCTTCAACGCATATTTAACGAGACTGAATGCAGAATCCTC
GCCGTGGCATCCCAGCTTGGGCCTTCACCATGA
UFO02605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 92..1177 | 9..1076 | 4745 | 96.7 | Plus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 599..694 | 240 | 83.3 | Plus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 599..694 | 240 | 83.3 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 238..362 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676650..10676995 | 444..99 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 10676097..10676377 | 871..592 | 1340 | 99.3 | Minus |
3R | 32079331 | 3R | 10676440..10676589 | 593..444 | 750 | 100 | Minus |
3R | 32079331 | 3R | 10677070..10677160 | 99..9 | 455 | 100 | Minus |
3R | 32079331 | 3R | 10675922..10676036 | 986..875 | 320 | 91.3 | Minus |
3R | 32079331 | 3R | 23092608..23092703 | 599..694 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23093968..23094092 | 238..362 | 190 | 76.8 | Plus |
3R | 32079331 | 3R | 23098473..23098537 | 607..671 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:57 has no hits.
UFO02605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:07 Download gff for
UFO02605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 4..992 | 1..986 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:57 Download gff for
UFO02605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 85..1073 | 1..986 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:30 Download gff for
UFO02605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 85..1073 | 1..986 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:30 Download gff for
UFO02605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10675907..10676036 | 875..999 | 92 | <- | Minus |
3R | 10676094..10676377 | 592..874 | 98 | <- | Minus |
3R | 10676442..10676588 | 445..591 | 100 | <- | Minus |
3R | 10676650..10676994 | 100..444 | 100 | <- | Minus |
3R | 10677070..10677166 | 1..99 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:57 Download gff for
UFO02605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501629..6501758 | 875..999 | 92 | <- | Minus |
arm_3R | 6501816..6502099 | 592..874 | 98 | <- | Minus |
arm_3R | 6502164..6502310 | 445..591 | 100 | <- | Minus |
arm_3R | 6502372..6502716 | 100..444 | 100 | <- | Minus |
arm_3R | 6502792..6502888 | 1..99 | 96 | | Minus |