UFO02606.5prime Sequence
1061 bp (930 high quality bases) assembled on 2009-01-14
> UFO02606.5prime
CAGTCGACATGGCCAGGAGATTCATTCTGTTGCTCGTCTTAGCTGTCTGC
CTGAGCGGAAGTGCCAGCGGACAAAGAGACCACCCTCGTGGGCGTTCCTT
TGATGCCGAATCGCATCCGATCAAGTATGCAGAGGAGCAGCAGACCCAGT
ACTGGGTGGATAAGGCCCAGGCGAAGCTGTTATCGAAGCTGGCCGAGCAG
GAGTCCGCGACCACAAACAAGGCGAAGAACGTGATTCTGTTCCTGGGCGA
TGGAATGTCCGTTCACACGGTCACGGCCACCAGGAATCTGCTAGGCGACA
GTGCGGAGCAGGTGTACTTTGAGGGATTTCCCTACACTGGCTTGTCCAAG
ACCTACTGCGTAAACCGCCAGGTGGCCGATTCTGCTTGCACGGCCACCGC
CTATTTGGGCGGTGTGAAGGCGAACTATGGAACGATTGGCGTTAACGCCA
ATGTGTCCAGGTACAGCTGTGATGGCGCCGCCAACGAGGAGGATCGGGTG
CTCAGCATCGCGCATTGGGCACAGGCGGCTGGCAAGGATGCAGGTCTGGT
GACTACAGCCCGGGTAACTCATGCATCCCCAGCTGGTGTTTATGCCCACA
TCGCGGATCGCAATTGGGAGAACGACTGGGAGGTGGCCAACAGGGAGTGC
GATCCCGAGCAGACCATCGATATTGCCCGTCAGCTCGTGGAGCAGCCTGT
GGGTCAGCAGCTGAAGGTAATCCTTGGAGGCGGTCGCAGAACTTCATCGA
CGCAACGGTAAATGATGAGGAGGGTTATCCCGGCAAGCGTACCGACGGTC
GTCACTTAATCCGCAGTTGGTTGGGATCAGAGAAGGAGGCCATGTCTCAG
CCAAATACGTGTGGAGTCGCAAGGGACTCAGTCTGGTTGATCTCGAGAAT
ACGGACTACCTATGGTCTCTTTGCCATGATCATCTGCGTACACGGTGATC
GGGACAGGAACGTAGTCAGTTGGCGGATCCTCGCTGATGGACTCACGGAG
GCTGCATCCCGGTGTGGCCCGATGACAGGAATTCTTTCCTTCGTCAAGGG
GGCTCGATCGA
UFO02606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1809-RA | 1686 | CG1809-RA | 62..1131 | 9..1061 | 4770 | 97.5 | Plus |
| CG8147-RA | 1862 | CG8147-RA | 486..575 | 347..436 | 225 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9562247..9563159 | 77..981 | 4095 | 98.4 | Plus |
| 2R | 25286936 | 2R | 9561699..9561768 | 9..78 | 350 | 100 | Plus |
| 3R | 32079331 | 3R | 9495347..9495436 | 347..436 | 225 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:01 has no hits.
UFO02606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:06 Download gff for
UFO02606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 51..1068 | 9..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:27 Download gff for
UFO02606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 62..1079 | 9..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:28 Download gff for
UFO02606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1809-RA | 62..1079 | 9..1015 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:28 Download gff for
UFO02606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9561699..9561768 | 9..78 | 100 | -> | Plus |
| 2R | 9562249..9563196 | 79..1015 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:27 Download gff for
UFO02606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5449204..5449273 | 9..78 | 100 | -> | Plus |
| arm_2R | 5449754..5450701 | 79..1015 | 98 | | Plus |
