UFO02607.5prime Sequence
1033 bp (953 high quality bases) assembled on 2009-01-14
> UFO02607.5prime
CAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGCAAGATAAT
GTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTTGAAAAAGT
AGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCCATTTTCGC
TGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTGTGATATTT
CGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTTTTTCTTCT
TCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGATGTGGTTA
ATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGATTACAGTG
AACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCGATCATCAA
GGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGTCACCCTGC
GAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCATCCAGGCAG
CAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACAGAACGTTG
GGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTTGCCAAGTA
GTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGGAGGCCAGG
GCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAGGCTTTAAA
AGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACAACTAGGCA
TCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTAATGTACTTT
TCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGAAAGGATTCG
TCGGATGCAGCACAGATGATGATGACCGGAGGATAGCGATGACGATTACG
ATTATTTACATTTATTTCACAAAGTTACATTTCGGGTACACCACCTGATT
TCTTATGATGCCAAACGAAGCCAACTGACACCCGAGTGAAAACACTGAAG
AGTGTGAAGAACACGGCGTCGTGGCCTAGCACA
UFO02607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42505-RA | 3446 | CG42505-RA | 57..1019 | 9..962 | 4595 | 99 | Plus |
| CG42504-RA | 3446 | CG42504-RA | 57..1019 | 9..962 | 4595 | 99 | Plus |
| CG31358-RB | 1979 | CG31358-RB | 57..1019 | 9..962 | 4595 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12031008..12031370 | 578..216 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 12030788..12030953 | 743..578 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12030507..12030721 | 954..746 | 820 | 95.3 | Minus |
| 3R | 32079331 | 3R | 12031424..12031570 | 218..72 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 12031634..12031701 | 76..9 | 325 | 98.5 | Minus |
| 3R | 32079331 | 3R | 12041098..12041363 | 309..574 | 265 | 73.3 | Plus |
| 3R | 32079331 | 3R | 12041461..12041609 | 594..742 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:45 has no hits.
UFO02607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:04 Download gff for
UFO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RA | 28..1005 | 3..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:33 Download gff for
UFO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RB | 54..1031 | 3..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:53 Download gff for
UFO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31358-RB | 54..1031 | 3..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:53 Download gff for
UFO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12030788..12030953 | 578..743 | 100 | <- | Minus |
| 3R | 12030475..12030724 | 744..980 | 94 | <- | Minus |
| 3R | 12031009..12031368 | 218..577 | 100 | <- | Minus |
| 3R | 12031425..12031569 | 73..217 | 100 | <- | Minus |
| 3R | 12031638..12031704 | 3..72 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:33 Download gff for
UFO02607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7856197..7856446 | 744..980 | 94 | <- | Minus |
| arm_3R | 7856510..7856675 | 578..743 | 100 | <- | Minus |
| arm_3R | 7856731..7857090 | 218..577 | 100 | <- | Minus |
| arm_3R | 7857147..7857291 | 73..217 | 100 | <- | Minus |
| arm_3R | 7857360..7857426 | 3..72 | 95 | | Minus |
