UFO02608.5prime Sequence
1038 bp (930 high quality bases) assembled on 2009-01-14
> UFO02608.5prime
CAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAATG
GTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCAG
CAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGTT
CGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCATC
AATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAACATGCGCAG
CCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCGC
ACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCAC
CAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCACG
TGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGACTACACCA
ATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTCA
TCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGAA
CGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAGT
TCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTACG
CGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTGCA
TCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGCAAAC
GCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATCCCACGGAT
TTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCTT
TGGCACATCCTTCACGTCTTTGACACGGCAACAAGGAGAGCACAGAGAGT
CCTCGACTCGACTTGCCGTCATCATTTATGACCACAACATTTGGATCAGG
GGCCACGCAACATGACTGTTATACTGCCCGGCATGACTGAGACGATCAGC
GTGTTCAAGATCAGTCGCGATCCAACAGCAGCATCTTG
UFO02608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 700..1713 | 9..1015 | 4830 | 98.9 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1740 | 273..1015 | 3510 | 98.5 | Plus |
| ktub-RC | 2523 | CG9398-RC | 700..964 | 9..273 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 273..743 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 21121639..21121903 | 9..273 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122717 | 740..930 | 820 | 98.5 | Plus |
| 2R | 25286936 | 2R | 21122796..21122863 | 948..1015 | 245 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:38 has no hits.
UFO02608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:02 Download gff for
UFO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| king-tubby-RB | 692..1722 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:30 Download gff for
UFO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1724 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:48 Download gff for
UFO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1724 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:48 Download gff for
UFO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21121633..21121903 | 1..273 | 98 | -> | Plus |
| 2R | 21122001..21122468 | 274..741 | 100 | -> | Plus |
| 2R | 21122526..21122716 | 742..929 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:30 Download gff for
UFO02608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009138..17009408 | 1..273 | 98 | -> | Plus |
| arm_2R | 17009506..17009973 | 274..741 | 100 | -> | Plus |
| arm_2R | 17010031..17010221 | 742..929 | 98 | -> | Plus |
