UFO02610.5prime Sequence
880 bp (744 high quality bases) assembled on 2009-01-14
> UFO02610.5prime
CAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCGGATCCGGA
AAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCCCGTGATAC
GACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGTGCGGTTTC
TGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGGAGGGCTTC
ATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGTAATGTGGA
AGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGAGCGCGACA
TCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATTCGCCTGAG
GCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCGGAAGGCTT
GCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAAATTATCAA
AGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATGAAACATTA
TACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAATGTTGCCGC
CCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGCGGACGAGG
TGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATTGCCAGAGC
AAGAAGAACCGCGACTCGCACGCTTTGAAAAGTGTCCAACATCATCAAGC
AGTTCAGCTGAGCTTGTTCGAGTTGGGCGCTAAGTTCCATCGATGGAGTG
GCGCATAGCGCATTTGCCCGCTTCATTGACACCTTCACAGCACCACTTAC
GGTGGTGGGTGGTCATGTCGATCCACCCCGTGCCCTCGGAGGCTCACGCT
AGTCCAACATTAAGACGCCTCGGAAGTACT
UFO02610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagA-B-RA | 1408 | CG11968-RA | 92..965 | 9..880 | 3810 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8983613..8983997 | 505..121 | 1925 | 100 | Minus |
| 3R | 32079331 | 3R | 8983264..8983551 | 788..506 | 1040 | 94.8 | Minus |
| 3R | 32079331 | 3R | 8984055..8984156 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:31 has no hits.
UFO02610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:20 Download gff for
UFO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11968-RA | 74..957 | 1..880 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:53 Download gff for
UFO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 74..957 | 1..880 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:46 Download gff for
UFO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 82..965 | 1..880 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:46 Download gff for
UFO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8983175..8983551 | 506..880 | 92 | <- | Minus |
| 3R | 8983613..8983997 | 121..505 | 100 | <- | Minus |
| 3R | 8984055..8984154 | 21..120 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:53 Download gff for
UFO02610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4808897..4809273 | 506..880 | 92 | <- | Minus |
| arm_3R | 4809335..4809719 | 121..505 | 100 | <- | Minus |
| arm_3R | 4809777..4809876 | 21..120 | 100 | <- | Minus |
