UFO02613.5prime Sequence
976 bp (832 high quality bases) assembled on 2009-01-14
> UFO02613.5prime
CAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGCTGACATCA
TCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAGAACCTATG
GTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAAACTTCCAT
CAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAAAGACGACA
CTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGTTCCGGCCT
GGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGACATGACGC
GTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAAACCTGCTA
CACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTCATCCTCAC
CGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAACCATTGGA
TCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACGCCAAAGAG
AAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGCTACTGTGA
GGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGACGATGCGCA
ACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGGATGCACTA
ATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAGACGGACTA
CATGACCACGCTAGAAGAAGGAGTACGAGTATCGTGACGAGCACTTTGAC
TTCATCCAGCAGTGGATACGTAACTTCTGCTGGGGCATGGCACTCGCTCT
TCTACACGAGCGTCAAGGAAGACAAGACTGTGATGTCTCTTACAAGTATC
TGACGCATCGATTTATGGTCTACATCGTACGCCAGCGCTAGTCGTGAGAA
AGATGCGTACTCATCGGCTGGCTGGATGCTGAAAAGATAGATTAAACAGA
AATTGCATGGAGTCAAGCCAGAATCC
UFO02613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1275 | 7..925 | 4295 | 98.3 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1275 | 7..925 | 4295 | 98.3 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..931 | 101..925 | 3825 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161718 | 291..692 | 2010 | 100 | Plus |
| X | 23542271 | X | 11161060..11161251 | 100..291 | 960 | 100 | Plus |
| X | 23542271 | X | 11161781..11161991 | 691..895 | 640 | 93.4 | Plus |
| X | 23542271 | X | 11155135..11155230 | 7..102 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:07 has no hits.
UFO02613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:58 Download gff for
UFO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic2-RC | 387..1286 | 1..895 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:39 Download gff for
UFO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1241 | 1..895 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:27 Download gff for
UFO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1241 | 1..895 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:27 Download gff for
UFO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11155130..11155228 | 1..100 | 97 | -> | Plus |
| X | 11161061..11161251 | 101..291 | 100 | -> | Plus |
| X | 11161318..11161718 | 292..692 | 100 | -> | Plus |
| X | 11161783..11162012 | 693..914 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:39 Download gff for
UFO02613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11055094..11055284 | 101..291 | 100 | -> | Plus |
| arm_X | 11049163..11049261 | 1..100 | 97 | -> | Plus |
| arm_X | 11055351..11055751 | 292..692 | 100 | -> | Plus |
| arm_X | 11055816..11056045 | 693..914 | 93 | == | Plus |
