UFO02615.5prime Sequence
1050 bp (929 high quality bases) assembled on 2009-01-14
> UFO02615.5prime
CAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGGCGCTGGCG
AGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTGGCCACAAG
TCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATACGCTAGACA
ACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGGTGGAGGTG
GCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATACCATACGAT
TCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAGGGAGGAGC
TTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTCTGCCCCTG
AGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTGGGAAGGGT
GAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGTATGGATCT
GCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGCCTTTGCCT
TACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACCAACCTGGA
GCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACATCTCGTGGG
CGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGTTGGCCCAC
GGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTGGCCAGAAA
TGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGTTGGCGATG
AAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAAAAGTGCGC
AAGTCTTCTGCCATGGACTCAGTGTTCAACTCGCCGCCAGGGAGCACGAA
CAGGCCCTCATGTACGAGATCCTCAGAGACCACCCCAGCAAAAGTATGAT
CTCACAGCGTGTGCTGCCGCGAATGCGCTGATGAGACTCTATGCAGTCTA
CGATGATGCTCATTTCGGAGACGATGCCAGAACCCATCTTGGGGCTATCT
CATGCCAGCGTGAATCAGCCTCTATGCTAGATTATCTGGATCGGCAACCT
UFO02615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1209 | 9..1005 | 4510 | 97.6 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1338 | 9..1005 | 4510 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31594044 | 198..875 | 3345 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 9..198 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:57 has no hits.
UFO02615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:56 Download gff for
UFO02615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1355 | 9..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:48 Download gff for
UFO02615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1355 | 9..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:47 Download gff for
UFO02615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1296 | 9..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:47 Download gff for
UFO02615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 9..198 | 100 | -> | Plus |
| 3R | 31593367..31594155 | 199..971 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:48 Download gff for
UFO02615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 9..198 | 100 | -> | Plus |
| arm_3R | 27419089..27419877 | 199..971 | 97 | | Plus |
