UFO02616.5prime Sequence
979 bp (891 high quality bases) assembled on 2009-01-14
> UFO02616.5prime
CAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTACTTCGACC
ACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGTAATTCGAG
AGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTATGGCGCTGC
TCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCCGGCGCAGC
AGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCCAACTTGAT
ACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACACAACAGATC
GGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACTGCCGCGTT
CGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGGGATCTCCA
CATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCGCTTTCTGG
CGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCGTTTCGGTG
CAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACGGAGCCCAA
GATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGCTCAGATCC
TGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCAATCTGACG
TGCATCGCACCCCAGCTCCAGGACCCTACACGCACATGCTGTGGCACAAG
GACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCGCGTAGAGTC
CGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAGTCCAGCACA
CGGACTCGGGCAACTACACTGCTCGCGGACAACTCGAATTCTGACAGCGT
CTTTGTGCATAATCATTAAAAGTGAGCAGCACGCGGCATGCAGCACGAGC
TGGGCTCGAGCTGCTCTGCCCCTTCTGCCCTGTGCTCTGCGTCTGCTGTC
GTCTGCTGGACCAACCTCAGCTCGATCAC
UFO02616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr5-RA | 1817 | CG5308-RA | 369..1296 | 8..930 | 4455 | 99.1 | Plus |
| dpr5-RB | 1419 | CG5308-RB | 46..898 | 83..930 | 4080 | 99.1 | Plus |
| dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 339..653 | 330 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11503411..11503780 | 213..582 | 1850 | 100 | Plus |
| 3R | 32079331 | 3R | 11504295..11504532 | 583..819 | 1140 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11501115..11501246 | 83..214 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 11500352..11500428 | 8..84 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 11505274..11505346 | 838..910 | 270 | 97.3 | Plus |
| 3R | 32079331 | 3R | 11535995..11536180 | 556..371 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:32 has no hits.
UFO02616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:55 Download gff for
UFO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..1305 | 1..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:36 Download gff for
UFO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..1305 | 1..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:24 Download gff for
UFO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..1305 | 1..937 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:24 Download gff for
UFO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11500345..11500428 | 1..84 | 95 | -> | Plus |
| 3R | 11501117..11501245 | 85..213 | 100 | -> | Plus |
| 3R | 11503412..11503780 | 214..582 | 100 | -> | Plus |
| 3R | 11504295..11504552 | 583..837 | 98 | -> | Plus |
| 3R | 11505274..11505377 | 838..937 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:36 Download gff for
UFO02616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7326067..7326150 | 1..84 | 95 | -> | Plus |
| arm_3R | 7326839..7326967 | 85..213 | 100 | -> | Plus |
| arm_3R | 7329134..7329502 | 214..582 | 100 | -> | Plus |
| arm_3R | 7330017..7330274 | 583..837 | 98 | -> | Plus |
| arm_3R | 7330996..7331099 | 838..937 | 93 | | Plus |
