UFO02617.5prime Sequence
1036 bp (938 high quality bases) assembled on 2009-01-14
> UFO02617.5prime
CAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCATCCTGATA
ATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCATCACGAGAG
CAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCATCAACAACG
TCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGGTGCGCAAT
CTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAGACCGTTTT
AGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAGCGTCATGC
ATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGCGGGAAAGT
GACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATGAAGAAACA
AGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAACGAAGAGT
CATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGCTCACCTGC
AAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGGGAGGACGG
CGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCATGAAAGTGG
AGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGAGGCGTCAG
ATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCTGCCGTCAG
CAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAGGGCCCCCA
GCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGGAATGCCAG
GTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGGGCGCGGAC
GTCCAACGGATTCGCCAGCGTCTCCACGGCAGCCTGAGTCCGGCTCGCGG
GTCCCGAAATGCTGCTCGACGGGTCCAGTACGGATACGAGCGCGCGATGC
TATCGGGGCGTCATGCTGCTGGTGGTGGTCTTCTCGCCCTCCGATGTGGG
CCCTATCACTGCTCAGACAACTCGGCTGCGTGCGAG
UFO02617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14521-RA | 3105 | CG14521-RA | 1381..2397 | 9..1012 | 4755 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28926898..28927072 | 597..423 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 28926165..28926365 | 924..727 | 855 | 98.5 | Minus |
| 3R | 32079331 | 3R | 28926717..28926847 | 726..596 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 28927475..28927596 | 217..96 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 28927135..28927241 | 423..317 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 28927310..28927412 | 316..214 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 28927684..28927771 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:22 has no hits.
UFO02617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:54 Download gff for
UFO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1356..2400 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:18 Download gff for
UFO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1374..2418 | 1..1033 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:40 Download gff for
UFO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14521-RA | 1374..2418 | 1..1033 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:40 Download gff for
UFO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28926167..28926365 | 727..922 | 98 | <- | Minus |
| 3R | 28926717..28926845 | 598..726 | 100 | <- | Minus |
| 3R | 28926898..28927071 | 424..597 | 100 | <- | Minus |
| 3R | 28927135..28927241 | 317..423 | 100 | <- | Minus |
| 3R | 28927310..28927410 | 216..316 | 100 | <- | Minus |
| 3R | 28927477..28927595 | 97..215 | 100 | <- | Minus |
| 3R | 28927684..28927778 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:18 Download gff for
UFO02617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24753199..24753317 | 97..215 | 100 | <- | Minus |
| arm_3R | 24753406..24753500 | 1..96 | 95 | | Minus |
| arm_3R | 24752439..24752567 | 598..726 | 100 | <- | Minus |
| arm_3R | 24752620..24752793 | 424..597 | 100 | <- | Minus |
| arm_3R | 24752857..24752963 | 317..423 | 100 | <- | Minus |
| arm_3R | 24753032..24753132 | 216..316 | 100 | <- | Minus |
| arm_3R | 24751889..24752087 | 727..922 | 98 | <- | Minus |
