UFO02620.5prime Sequence
1011 bp (890 high quality bases) assembled on 2009-01-14
> UFO02620.5prime
CAGTCGACATGCTGCTCTCAATGCAAATGTGGCGCTCTCTGTGGCTGGCG
GCCCTATTCTGCGGATTAGCCCAGGCCAAAGGTTCCCACAAGGTGCACTG
TTCGGAGGATCAGATGAGGGTTGACATCGGACTGCCGGATGCGGAGTCAA
AGGATCAGAGTGCTCCTCAGATCTATTTGGAGGGATTGAAGGGATATCCG
GATGAACGATGCCAGCCGCAAATCGATGGATCCCTGGCCGTTTTTCGGCT
TTCACTCAGCGATTTTTACGAGTGCGGAGTAACTCGAATGGTCAACCAGC
TAACGGGCAAGAAGGTGTATTACCATAAAATCATCATCGAGTCAACCAGC
GGCAAGGAGATCGTCAGCGTTAAGTGCATCACCACCGCCAGTCCCGCCTA
TAATGTGATGATGAATGCCACCACCGGGTCCAGTTCCACGTCCACTTCCA
GCGGCGGCATCCACGGCCTGGTCAAGCGGGATGTGCTGCCGGCGGGATTC
CAGGAACCCGAGGATCTGGAGATCACCACATCGCTGACCAAGCGGGCCCC
GGAGCCACGACTCTCAATTGGCGTTAGCCAGGATGGTCAGAAGTTCACCA
GGGATTTGACTGTCAAGTCGGGCACACCTTTGACAATGGAAATCAATCTG
GATGAGGACTCTGCACCTGTTTATGGTCTGGGTGTCAACTATTTGGATGT
GACGGATACGCATACGTCATCGGAAACGTTGATCTTCAAGGGCTGCACAG
TGGATCCCTATCTCTTCGAGAACTTCAACACCATTGATGGCGACATTTTG
AGTGCCAAGTTCAAGGCCTTCAGTTCCCGACTCGTCGTACGGGCAATTCC
GTGCCACGGTCAACGTGTGTTTGGACAAGTGCCTCGGCACCAGTGCTCAA
CACAGTGGCTTCGTCGACGCAGCGAGAGATCAGCTCAGCGAACAAGTCTA
ACGAGATCTCGCTGCAAGTTTCTTGCAGTCAAGAAATCAAGGTTTCCACA
AGAATGAGTCC
UFO02620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 261..1274 | 9..1008 | 4545 | 97.4 | Plus |
| qsm-RA | 1817 | CG13432-RA | 122..1135 | 9..1008 | 4545 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20565277..20565503 | 306..80 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 20565000..20565207 | 512..305 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 20563837..20564069 | 964..742 | 660 | 90.6 | Minus |
| 2R | 25286936 | 2R | 20564130..20564252 | 742..620 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 20564322..20564431 | 621..512 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 20581559..20581633 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:11 has no hits.
UFO02620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:51 Download gff for
UFO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05510-RA | 118..1094 | 9..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:11 Download gff for
UFO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1098 | 9..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:17 Download gff for
UFO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1098 | 9..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:17 Download gff for
UFO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20564323..20564431 | 512..620 | 100 | <- | Minus |
| 2R | 20565001..20565206 | 306..511 | 100 | <- | Minus |
| 2R | 20565278..20565501 | 82..305 | 100 | <- | Minus |
| 2R | 20581561..20581633 | 9..81 | 100 | | Minus |
| 2R | 20563829..20564068 | 743..970 | 93 | <- | Minus |
| 2R | 20564130..20564251 | 621..742 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:11 Download gff for
UFO02620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16451828..16451936 | 512..620 | 100 | <- | Minus |
| arm_2R | 16451334..16451573 | 743..970 | 93 | <- | Minus |
| arm_2R | 16451635..16451756 | 621..742 | 100 | <- | Minus |
| arm_2R | 16452506..16452711 | 306..511 | 100 | <- | Minus |
| arm_2R | 16452783..16453006 | 82..305 | 100 | <- | Minus |
| arm_2R | 16469066..16469138 | 9..81 | 100 | | Minus |
