UFO02621.5prime Sequence
1023 bp (924 high quality bases) assembled on 2009-01-14
> UFO02621.5prime
CAGTCGACATGTACAACAATATTAAGGGCCTACACATAAATGAATACCAG
AGGGAGAATGGAGATAATACCAGAAAGCTGGCGTGTGAAGGTACAGTGAA
GCTAAACGCCAATGCCCAAGAATTTGTGCCACGTTACAAGAGGGAACAAC
CAGCAAAAGATGATGCTATAGTTGGTAACAGTAACATGAGCAACACCAAT
AACGACGACCAAAAACCAAAATCTAACCTTATGTTGCCGTGGAAAGGATT
TCCGAATAAATCTCAAAAACCTTCTCGCAATGTGGACTACATAGTTCTAC
CGAGCACCAAAAGATTTAAAAAGCCCATTGGCCAACAACTCGTGGAAAAT
GTTTCCACTACGCCCTCAAAAGTCCATTTAAATGATCCTGTTCCAGCTGG
AAATCGCATTGATCACGAGGAAAGGCGCCGCGAACACGATAGAAAAATCG
CTGTGGAAGCCTTAAAGTTGGCCGAACAGCGTAGAATGAGGGATCCTGTC
ATTGCCCCCACGGAGGGCAATGAAAACTCAAAGAACGTGCCGCCAATTAT
AAATATCTCACGATCTCCAATAAAGTTCACGCCAAATGAAAGGATCAGAG
TGGACCGTTTAAGGGCAGCGAAGAGAGAGCGTATCGAGCGTATCCTTCGC
GAAATGACAAACAGCAAGCAGTCGCAAGTGAAGAAAGAGCAGCTCAAGGA
GGAGAAGATTTGTTTTGATAATGCACCCAATGAATCTAATAAGCCTAATG
AACCTGCTAAACCTATGCCTCAGCATCCGGAGAAGACAAATGAAGTGCCC
ATAGTTACCAAAAGAGGTACATACCACCACCAGGAATGGGACGAGCGATG
TCGTGCCAACATTTGGCTAGATGGAAGCTGAAAAGAAAAATCAGATGGGT
GTTCAGATGCGACCCTTCGCATCTGCTTTGCCACCAAACATGTGACCTCC
ATGTGTGAACTTTCTCCGTCGGAGTTATTCGTTGTGCGATCGCTTTAGTC
CACCTGCTAAACATTGCAAACGG
UFO02621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6304-RB | 1657 | CG6304-RB | 258..1284 | 8..1017 | 4685 | 98.1 | Plus |
| CG6304-RA | 1526 | CG6304-RA | 199..1225 | 8..1017 | 4685 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17011849..17012612 | 1017..271 | 2995 | 97.4 | Minus |
| 2L | 23513712 | 2L | 17012674..17012936 | 270..8 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:49 has no hits.
UFO02621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:21 Download gff for
UFO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 114..1152 | 1..1023 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:34 Download gff for
UFO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 114..1152 | 1..1023 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:23 Download gff for
UFO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6304-RA | 194..1232 | 1..1023 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:23 Download gff for
UFO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17011842..17012612 | 271..1023 | 97 | <- | Minus |
| 2L | 17012674..17012940 | 1..270 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:34 Download gff for
UFO02621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17011842..17012612 | 271..1023 | 97 | <- | Minus |
| arm_2L | 17012674..17012940 | 1..270 | 98 | | Minus |
