UFO02623.5prime Sequence
998 bp (883 high quality bases) assembled on 2009-01-14
> UFO02623.5prime
CAGTCGACATGGGCTACCCCAAGGAGATCCTGCAGTTCGAGTACGATCCC
ACCTTCCCAGTACGCGGCCTGTGGTTCGACACTCTCTACGGGAATCTGCT
GAAAGTGGATGCCTACGGCAACATCCTGGTCTGCGTTCATGGCTTCGAGT
TCATCAAACATCACCAGGTGTACGAGTTGTATCCCAACAAGTTCTTGAAA
CTGGACGAGTCGCGTGTCTATGTCCTGAATACTCTCTTCAATCTTCCTGA
AACCTATCTCCTTGCCTGTCTCGTCGACTTCCTAACCAACAGCAGCGACT
TTGTGCGCGTTGAGCGCGGCATCAAAGCTGGCGATTTACTTTTTACCTAC
AAGTCGATTTTCCAGGATGTGCGACGTGCCGTCGACTGGGTGCATTCCGA
TGGCGATCTGAAGCGTCGCACCACTCAGAATATGGCTCACTATGTGAAGA
AGGACGAGCGTTTGCCCACGGTCCTTTCGCGAATCCGGGAGTCGGGCGCC
AAACTCTTTATGCTGACCAACAGCGACTATACGTACACCAACGAGATCAT
GACCTACCTGTTTGATTTCCCCCATGGCGCCACTCCGGATGAGCCGCATC
GCGACTGGAAGACCTACTTCGATGTGATCGTGGTGGATGCCCGCAAGCCG
CTCTTCTTCGACGAGGGCACCGTGCTGCGGCAGGTGGACACGAAGACCGG
AAGCCTGAAGATCGGCACACACGTTGGACCCCTGCAGCCGGGTCAGGTTT
ATTCCGGTGGCTCCTGCGAGCTCTTTACCAAGTTCATCAATGCCAAAGGC
AAGGACGTGCTCTATGTGGGGCGATCACATTTTTGGCGATATCTCAAATC
GAGAGATTCGAGGCTGCGCACTCTATTGTGCCCGATGGTGAGGAGCTGCA
CGTTTGACGATGATGCACTGTTGCGACTACAGACTGACTCAGCTGGCGAC
TGTACAGGATCCCGATCGAGTGCAAGGTCAGCGAACTTCGCAACTGCC
UFO02623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-RH | 2677 | CG32549-RH | 911..1911 | 8..980 | 4275 | 96.9 | Plus |
| CG32549-RG | 2806 | CG32549-RG | 1040..2040 | 8..980 | 4275 | 96.9 | Plus |
| CG32549-RF | 2652 | CG32549-RF | 828..1828 | 8..980 | 4275 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18391543..18391968 | 852..427 | 2035 | 99.5 | Minus |
| X | 23542271 | X | 18392549..18392701 | 160..8 | 765 | 100 | Minus |
| X | 23542271 | X | 18392335..18392481 | 307..161 | 735 | 100 | Minus |
| X | 23542271 | X | 18392040..18392161 | 428..307 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:35 has no hits.
UFO02623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:59 Download gff for
UFO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RC | 54..991 | 1..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:39 Download gff for
UFO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RF | 820..1757 | 1..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:26 Download gff for
UFO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RF | 820..1757 | 1..922 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:26 Download gff for
UFO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18391458..18391966 | 429..922 | 96 | <- | Minus |
| X | 18392040..18392160 | 308..428 | 100 | <- | Minus |
| X | 18392335..18392481 | 161..307 | 100 | <- | Minus |
| X | 18392549..18392706 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:39 Download gff for
UFO02623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18285491..18285999 | 429..922 | 96 | <- | Minus |
| arm_X | 18286073..18286193 | 308..428 | 100 | <- | Minus |
| arm_X | 18286368..18286514 | 161..307 | 100 | <- | Minus |
| arm_X | 18286582..18286739 | 1..160 | 97 | | Minus |
