UFO02626.5prime Sequence
1069 bp (951 high quality bases) assembled on 2009-01-14
> UFO02626.5prime
CAGTCGACATGGCGGAGGTTCTCAATTTGGAGAGCATAATTTCCCGTCTG
TTGGAGGTGCGTGGCGCACGGCCTGGCAAGAATGTCCAGCTGTCGGAGGG
TGAGATACGGGGCCTGTGCCTCAAGTCGCGCGAAATACTGCTGGCACAGC
CCATACTCTTAGAGCTGGAGGCGCCGCTCAAGATCTGCGGCGATATCCAT
GGCCAGTACTATGATCTGTTGCGTCTGTTCGAGTACGGCGGCTATCCGCC
GGAGGCTAACTATCTTTTCTTGGGCGATTACGTGGACAGGGGCAAGCAGT
CGCTGGAGACCATCTGCCTGCTGTTGGCGTACAAGATCAAGTATTCGGAG
AACTTCTTTTTGTTGCGCGGCAATCACGAGTGCGCCAGCATTAATAGAAT
CTATGGATTCTACGACGAGTGCAAGCGCAGATATACCATCAAGTTGTGGA
AGACATTCACGGACTGCTTCAACTGTCTGCCAGTTGTGGCCATTGTGGAT
GAGAAGATCTTTTGCTGCCACGGCGGACTGAGTCCGGATCTTACCTCGAT
GGAGCAGATCCGTCGTATTATGCGTCCCACCGATGTTCCCGATCAGGGAC
TACTCTGTGACCTGCTGTGGTCCGATCCGGACAAGGACACCATTGGGTGG
GGCGAGAACGACCGTGGCGTTAGTTTCACCTTTGGCGCCGAAGTTGTGGT
CAAGTTCCTCCAAAAGCACGATCTGGATCTGATCTGTCGTGCCCATCAAG
TCGTCGAGGATGGTTACGAGTTCTTTGCCAAGCGCCAATTGGTCACTTTG
TTTTCCGCCCCCAACTATTGCGGTGAATTCGACAATGCTGGTGCCATGAT
GTCCGTGGACAATACACTCATGTGCTCCTTCCAATCCTGAAGCCTGTCGA
GAGCGCAGAAGGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGT
AGTGGTCATATCATATCATATCATATCTAAATCACACTAGCTAGAGATCT
GTCATGACATATGCTGAATTCTCACATAAAACGCCCGGGCGCACCGGAGC
GTCTGACCATCCGATTGAG
UFO02626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-13C-RA | 1892 | CG9156-RA | 655..1556 | 8..907 | 4460 | 99.8 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 254..1116 | 33..894 | 2190 | 83.7 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 429..1264 | 48..883 | 1900 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15359443..15360338 | 902..8 | 4430 | 99.9 | Minus |
| 3R | 32079331 | 3R | 12424813..12425664 | 884..33 | 2175 | 83.7 | Minus |
| 3R | 32079331 | 3R | 24518843..24519189 | 57..403 | 820 | 82.4 | Plus |
| X | 23542271 | X | 10406379..10406692 | 84..397 | 715 | 81.8 | Plus |
| 3R | 32079331 | 3R | 24519597..24519874 | 408..685 | 685 | 83.1 | Plus |
| X | 23542271 | X | 10406764..10407038 | 408..682 | 430 | 77.1 | Plus |
| 2R | 25286936 | 2R | 17955968..17956334 | 535..169 | 395 | 73.8 | Minus |
| 3R | 32079331 | 3R | 24519961..24520089 | 714..842 | 240 | 79.1 | Plus |
| X | 23542271 | X | 10407172..10407299 | 756..883 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:16 has no hits.
UFO02626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:16 Download gff for
UFO02626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-13C-RA | 648..1564 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:20 Download gff for
UFO02626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-13C-RA | 648..1564 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:54 Download gff for
UFO02626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-13C-RA | 648..1564 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:54 Download gff for
UFO02626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15359433..15360342 | 1..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:20 Download gff for
UFO02626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15253466..15254375 | 1..910 | 99 | | Minus |
