UFO02630.5prime Sequence
978 bp (860 high quality bases) assembled on 2009-01-14
> UFO02630.5prime
CAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTGCTCTGCAG
GCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACCACCGGCCA
GAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTGGAGTGATC
CCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGCTGCTGTAC
TGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGCTATCCATG
TCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAAGCGTAAGG
ATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCACTCAGTCCG
CTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCCTGCCAACC
CGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAACCGCAACCG
GCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGGAGGACATG
CTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCAAAGGGTCC
ATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACTGGCCGAGT
GCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATCCGGCAGAG
GAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACGCCGGGTCA
CATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTTGCCGCACT
ATCATGCTCCGCATTAAATGTGCTATTGAGCTGGACACTCTGGCCCCTGT
CCACCTGTTCAATTCTTTCGCATACCGACAAGGTCCAGGAAGACAACGGG
CAGCACCCTGCAGCTTTTGCCTCGTGCCAGAGCCAGTGCAAAGAGGGCTA
ATTGGCCTGGGAGCATTGCATTCTGCTATCGACTGGTACACAAGGGGTCC
TGTGGAACCCATGAATTCCTGGGTCAAC
UFO02630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16959-RE | 1866 | CG16959-RE | 268..1237 | 8..978 | 4380 | 97.3 | Plus |
| CG16959-RD | 1843 | CG16959-RD | 245..1214 | 8..978 | 4380 | 97.3 | Plus |
| CG16959-RC | 2043 | CG16959-RC | 445..1414 | 8..978 | 4380 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15122624..15123055 | 439..8 | 2160 | 100 | Minus |
| 3L | 28110227 | 3L | 15121071..15121409 | 776..438 | 1680 | 99.7 | Minus |
| 3L | 28110227 | 3L | 15120761..15120943 | 972..790 | 360 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:43 has no hits.
UFO02630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:14 Download gff for
UFO02630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RB | 235..1211 | 1..978 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:29 Download gff for
UFO02630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RB | 238..1214 | 1..978 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:19 Download gff for
UFO02630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RC | 438..1414 | 1..978 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:19 Download gff for
UFO02630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15121064..15121407 | 440..784 | 99 | <- | Minus |
| 3L | 15122624..15123058 | 1..439 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:29 Download gff for
UFO02630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15114164..15114507 | 440..784 | 99 | <- | Minus |
| arm_3L | 15115724..15116158 | 1..439 | 99 | | Minus |
