UFO02633.5prime Sequence
1049 bp (943 high quality bases) assembled on 2009-01-14
> UFO02633.5prime
CAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTCGTCGCATG
TTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGTGATGAGTA
CGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAAGATGCGAC
AGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTAAGGTGGCT
GGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACGGCATCATC
GCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACGCGTTACCC
GCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTAGCAGCACG
CCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCACGCGCACG
CCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGCCGAGGCCG
GCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCAAGCTGCAG
GCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGACTTGGCCGC
CAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATATCCAACGCA
TGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGTTGGCGGCG
ACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAGGTGTCCAT
AGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACACGGACAATT
GCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGATCGACGGAG
CAGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTACTCGGAGCAA
AGCTTCCATTCGAACGACTGTCTGGCGCATCGATGGACGAGGATCTGGAT
GGTGAGGAGGAGCTGAATACACACCGCCATCGGCGTGATGGCGACGCGAT
GAGGAGCGACGCAGTCTGCTGTGACGCTGACAGAAAGATCCAATGCAGCC
CATCACCGCTGAATGCTCAGTCAAGCTCATGATCGATCGAAGACACCTA
UFO02633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-RA | 1867 | CG4198-RA | 175..1195 | 8..1011 | 4665 | 98.1 | Plus |
| CG4198-RB | 1864 | CG4198-RB | 175..1192 | 8..1011 | 4610 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5313432..5314145 | 8..721 | 3570 | 100 | Plus |
| X | 23542271 | X | 5314210..5314440 | 720..948 | 960 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:27:02 has no hits.
UFO02633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:10 Download gff for
UFO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 159..1124 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:49 Download gff for
UFO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 167..1132 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:00 Download gff for
UFO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 167..1132 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:00 Download gff for
UFO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5313424..5314145 | 1..721 | 99 | -> | Plus |
| X | 5314212..5314455 | 722..960 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:49 Download gff for
UFO02633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5207457..5208178 | 1..721 | 99 | -> | Plus |
| arm_X | 5208245..5208488 | 722..960 | 96 | <- | Plus |
