UFO02637.5prime Sequence
861 bp (741 high quality bases) assembled on 2009-01-14
> UFO02637.5prime
CAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCGGTAAGGAG
CACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAGGAGCCCAA
GTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGCTGCTAACG
TAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGCAGCAGCTA
AAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAAGAGTTTAT
GCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAACGACAACCA
CTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGTCCAAGGTA
ATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAGAACTTTGA
CGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTTCTCCTGCG
CTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACCTTGGCTGC
ATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTGCGGAAGTC
GTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTTAAGTGCAA
CTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCTACGACTCCA
ACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCCCCTCACCTATTT
CTCCAAGTACCCTGGCGGTCAGAGGCACGAGCAGGTGGAGACAAGACGAG
ATGCGCTGGACATCGATTCCCTGAAAGAGTCGATGGAGGCGTGGTCCGCC
CCAGGAGCAGCCCAGAGCGGACTGAGGTGGAGGGACCAGCGCATCATGCC
CAAGAAGACAT
UFO02637.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtg-RF | 2276 | CG7549-RF | 837..1691 | 9..854 | 3835 | 97.4 | Plus |
| mtg-RE | 2399 | CG7549-RE | 960..1814 | 9..854 | 3835 | 97.4 | Plus |
| mtg-RH | 2233 | CG7549-RH | 794..1648 | 9..854 | 3835 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8259119..8259459 | 9..349 | 1705 | 100 | Plus |
| 3R | 32079331 | 3R | 8259773..8260062 | 503..789 | 1145 | 96.9 | Plus |
| 3R | 32079331 | 3R | 8259545..8259705 | 346..506 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:51:10 has no hits.
UFO02637.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:04 Download gff for
UFO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7549-RB | 23..892 | 1..861 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:16 Download gff for
UFO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RE | 953..1822 | 1..861 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:50 Download gff for
UFO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RH | 788..1657 | 1..861 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:50 Download gff for
UFO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8259113..8259457 | 1..347 | 98 | -> | Plus |
| 3R | 8259547..8259702 | 348..503 | 100 | -> | Plus |
| 3R | 8259774..8260142 | 504..861 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:16 Download gff for
UFO02637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4084835..4085179 | 1..347 | 98 | -> | Plus |
| arm_3R | 4085269..4085424 | 348..503 | 100 | -> | Plus |
| arm_3R | 4085496..4085864 | 504..861 | 93 | | Plus |
