UFO02638.5prime Sequence
1043 bp (920 high quality bases) assembled on 2009-01-14
> UFO02638.5prime
CAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGATTCCAACAG
TACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTGAAGCAGAT
GGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGATGGACAGCT
GGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCC
CTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCAT
TCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAG
GTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGG
TACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGA
TGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTC
AGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTG
TGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTA
CAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCT
ACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAAC
ATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCC
AGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCG
ACCAGGAGAAACATTGGTGCTGTCAACTACCTGCCAATCAGGGATTCCCC
GGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCTGGTG
GCGGTGCACTTCCAGCGCCCAAACGCGGATCATCATCAACGTGGAAGTGC
AGGCTTGGCTCGCAACATCATAACCGATCGCAAGGAGAGAATCGGATCGG
TGCACTATGAGCTCCTCATGATGCAGCTTTCTAGAACATCGGTGGGCGCG
GGCAGTATGCAATCTACTCCTATCTAATCTTCCACTAGCCTAA
UFO02638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 795..1759 | 9..969 | 4605 | 99 | Plus |
nrv2-RF | 2143 | CG9261-RF | 303..1267 | 9..969 | 4605 | 99 | Plus |
nrv2-RC | 2668 | CG9261-RC | 828..1792 | 9..969 | 4605 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 707..410 | 1475 | 99.7 | Minus |
2L | 23513712 | 2L | 6796337..6796481 | 153..9 | 725 | 100 | Minus |
2L | 23513712 | 2L | 6791699..6791842 | 296..153 | 720 | 100 | Minus |
2L | 23513712 | 2L | 6790804..6790969 | 870..706 | 685 | 98.2 | Minus |
2L | 23513712 | 2L | 6791518..6791640 | 414..292 | 615 | 100 | Minus |
2L | 23513712 | 2L | 6790646..6790737 | 969..879 | 290 | 92.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 255..202 | 117 | 68.5 | Minus |
UFO02638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:03 Download gff for
UFO02638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 295..1268 | 3..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:19 Download gff for
UFO02638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1796 | 3..972 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:25 Download gff for
UFO02638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1796 | 3..972 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:25 Download gff for
UFO02638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6796337..6796486 | 3..153 | 98 | | Minus |
2L | 6790642..6790742 | 875..972 | 93 | <- | Minus |
2L | 6790799..6790967 | 708..874 | 97 | <- | Minus |
2L | 6791031..6791323 | 415..707 | 100 | <- | Minus |
2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:19 Download gff for
UFO02638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6796337..6796486 | 3..153 | 98 | | Minus |
arm_2L | 6790642..6790742 | 875..972 | 93 | <- | Minus |
arm_2L | 6790799..6790967 | 708..874 | 97 | <- | Minus |
arm_2L | 6791031..6791323 | 415..707 | 100 | <- | Minus |
arm_2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
arm_2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |