Clone UFO02638 Report

Search the DGRC for UFO02638

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:26
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptnrv2-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02638.5prime Sequence

1043 bp (920 high quality bases) assembled on 2009-01-14

> UFO02638.5prime
CAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGATTCCAACAG
TACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTGAAGCAGAT
GGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGATGGACAGCT
GGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCC
CTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCAT
TCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAG
GTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGG
TACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGA
TGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTC
AGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTG
TGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTA
CAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCT
ACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAAC
ATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCC
AGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCG
ACCAGGAGAAACATTGGTGCTGTCAACTACCTGCCAATCAGGGATTCCCC
GGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCTGGTG
GCGGTGCACTTCCAGCGCCCAAACGCGGATCATCATCAACGTGGAAGTGC
AGGCTTGGCTCGCAACATCATAACCGATCGCAAGGAGAGAATCGGATCGG
TGCACTATGAGCTCCTCATGATGCAGCTTTCTAGAACATCGGTGGGCGCG
GGCAGTATGCAATCTACTCCTATCTAATCTTCCACTAGCCTAA

UFO02638.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 795..1759 9..969 4605 99 Plus
nrv2-RF 2143 CG9261-RF 303..1267 9..969 4605 99 Plus
nrv2-RC 2668 CG9261-RC 828..1792 9..969 4605 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 707..410 1475 99.7 Minus
2L 23513712 2L 6796337..6796481 153..9 725 100 Minus
2L 23513712 2L 6791699..6791842 296..153 720 100 Minus
2L 23513712 2L 6790804..6790969 870..706 685 98.2 Minus
2L 23513712 2L 6791518..6791640 414..292 615 100 Minus
2L 23513712 2L 6790646..6790737 969..879 290 92.5 Minus
Blast to na_te.dros performed 2014-11-28 19:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 255..202 117 68.5 Minus

UFO02638.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:03 Download gff for UFO02638.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 295..1268 3..972 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:19 Download gff for UFO02638.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1796 3..972 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:25 Download gff for UFO02638.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1796 3..972 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:25 Download gff for UFO02638.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6796337..6796486 3..153 98   Minus
2L 6790642..6790742 875..972 93 <- Minus
2L 6790799..6790967 708..874 97 <- Minus
2L 6791031..6791323 415..707 100 <- Minus
2L 6791518..6791637 295..414 100 <- Minus
2L 6791701..6791841 154..294 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:19 Download gff for UFO02638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6796337..6796486 3..153 98   Minus
arm_2L 6790642..6790742 875..972 93 <- Minus
arm_2L 6790799..6790967 708..874 97 <- Minus
arm_2L 6791031..6791323 415..707 100 <- Minus
arm_2L 6791518..6791637 295..414 100 <- Minus
arm_2L 6791701..6791841 154..294 100 <- Minus