UFO02640.5prime Sequence
903 bp (747 high quality bases) assembled on 2009-01-14
> UFO02640.5prime
CAGTCGACATGCGAGATCGTCACTTGGCCAAAATGCCGCGTGGAGGAACG
ACAACATCGCGCTATGAGGAGGATCCAGATAATGCCTGGAATTGCTGCTC
CTGGTGCGAATACTTGCTGATCGTCATCCTGTCCACGATCCTGCTGGTGG
GCGTGCTGGTGCTAACCCTCTTCTGGGTGATGTTCTACCGCGATGGCTTC
GCCTGGTCGGAGAGTCCCAAGCAGCAGTTCAATCTGCATCCCATCCTCAT
GATTGCTGGCTTCGTCACGCTCTCCGGATTTTCCATCTTGATCTATCGTC
TGTGCCGCTGCGTGAAGCAAATCTATGTGAAGCTGATCCACATGTTCTTC
CACGCCGTGGCCATTCCGTGCATCGCCCTGGGTTTCATATCCGTCTTCGC
TTCCCACGACGCGTTGCATAAGGTCAACTTCTATAGCCTCCACTCGTGGC
TGGGCTTCGTGACAATGGGCATGTTCGTGCTCCAGTTTGTGATCGGCTTC
TTCAGCTTTCTGGTAATGCTGTGCTGTGAGAACAAGACCTACAGCTGCCG
CTCGGCCATGGTGCCCATCCACGCCAGCTTGGACTGGCCAACTTCTGGCT
GGCCATTGCCACATCCGTCACGGGACTGATCGAGAAGGGCGCGAAACCGT
CAACGAGCGGGCGTGAGCAGTGAGAACAAGCTGGTGGAGCCACTACATCA
CCAGTGCCATCGGCGTGACCCTGATCTTCATTGGCATCATCGTCACTTCG
CGGTGCGGCGTTCCAATGCGCCCGCCTCGGCGAAGTCTACGTCACGGAGC
GCATTGCAGCTTTCTAGACATTCGTTTGGCCGCCCGGCCCAGTAGTGTCT
ACTAAAACCTATTCTAATCCTATCCCACCTAGCTAGGGATCTGTCTGACT
ATG
UFO02640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nemy-RB | 1804 | CG8776-RB | 254..1054 | 9..805 | 3860 | 99.3 | Plus |
| nemy-RG | 1849 | CG8776-RG | 299..1099 | 9..805 | 3860 | 99.3 | Plus |
| nemy-RE | 2224 | CG8776-RE | 766..1566 | 9..805 | 3860 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12660973..12661196 | 282..59 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 12660678..12660900 | 505..283 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12660457..12660630 | 667..497 | 705 | 97.7 | Minus |
| 2R | 25286936 | 2R | 12660247..12660387 | 805..666 | 560 | 97.9 | Minus |
| 2R | 25286936 | 2R | 12664984..12665034 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:00 has no hits.
UFO02640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:47 Download gff for
UFO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8776-RB | 243..1055 | 1..809 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:15 Download gff for
UFO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 757..1569 | 1..809 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:09 Download gff for
UFO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RE | 757..1569 | 1..809 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:09 Download gff for
UFO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12660247..12660385 | 668..805 | 97 | <- | Minus |
| 2R | 12660457..12660621 | 506..667 | 98 | <- | Minus |
| 2R | 12660678..12660900 | 283..505 | 100 | <- | Minus |
| 2R | 12660973..12661196 | 59..282 | 100 | <- | Minus |
| 2R | 12664985..12665040 | 1..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:15 Download gff for
UFO02640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8548478..8548701 | 59..282 | 100 | <- | Minus |
| arm_2R | 8547752..8547890 | 668..805 | 97 | <- | Minus |
| arm_2R | 8547962..8548126 | 506..667 | 98 | <- | Minus |
| arm_2R | 8548183..8548405 | 283..505 | 100 | <- | Minus |
| arm_2R | 8552490..8552545 | 1..58 | 93 | | Minus |
