UFO02643.5prime Sequence
1104 bp (1007 high quality bases) assembled on 2009-01-14
> UFO02643.5prime
CAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGATCGTGGGT
CGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTTAAAGCTGG
AAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTTCAAGGTCC
TGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGCTGAAGGAG
AACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGGGCGGAGCT
GCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGGACACGAAC
CCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGAAATCCATC
TCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAGGTAAAGAG
ACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACACCGCCGTGG
CCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTTTTCACGAG
GGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCATCTTAACTG
GCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTACGGCTTTG
GAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCGACATTGAC
AAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATCGAGGAGGA
GTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGAGAGTGACT
TCGTAGTGATCGCTTCTCCTTTGACGAAAGACACACAGGGCGTCTTTAAT
GCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTTAACATTGC
CAGGGGCAAATCGTCAACCAAGGATGACCTCTACGAGGCTTTGAAAGCCA
ACCGAATCTTTTCCGCCGGACTCGACGTCACGGATCCGGAACATTGTCGC
CAAGGACAAGCTGCTGACGCTTGACAATGTTGTTGTCCTGCCCATATTGG
ATCGCCACGAAGCGCACCGTGCGACTGTCCACCATTGCTGCCATATGTGG
CCTCCGCGGATTGCTGGGGAGCCATGTTGTCGCCGCCTACCAGCTTCTGA
ACAA
UFO02643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1438 | 9..1090 | 5055 | 98.4 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1301 | 9..1090 | 5055 | 98.4 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1715 | 9..1090 | 5055 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 100..520 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 521..858 | 1675 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 517..858 | 555 | 77.5 | Plus |
| 2L | 23513712 | 2L | 20827032..20827157 | 858..982 | 485 | 97.6 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:09 has no hits.
UFO02643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:46 Download gff for
UFO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1410 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:57 Download gff for
UFO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1412 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:43 Download gff for
UFO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1718 | 9..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:43 Download gff for
UFO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20827032..20827157 | 859..982 | 96 | -> | Plus |
| 2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| 2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 521..858 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:57 Download gff for
UFO02643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 521..858 | 99 | -> | Plus |
| arm_2L | 20827032..20827157 | 859..982 | 96 | -> | Plus |
