UFO02644.5prime Sequence
1060 bp (969 high quality bases) assembled on 2009-01-14
> UFO02644.5prime
CAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCGGCAGGCCG
CAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAGCAGCTCCT
GCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCTGCCACCCG
CACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGGCGGAGACG
CCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGACATGATGAT
GTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCGTGGCACCT
GGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGCTGTCTGCG
ATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTCACAGTCAC
ACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCGACTCACAT
ACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCGTTTGCGTG
AATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACCAGTGTGGA
CTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCATCTTTCTGG
TAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACACCGTTACC
ATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTCAAAATACC
CGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTTCTCGGTCT
TTGTGATCGGCAGCCTGGTGGTCATCGCTTGGCGCGGCGTCTGGGGAATC
TTTGACCTGCTGCTGTTCCCGGCGGACAGCCAATCGGCCTGGGGATCGCT
GCTCATGGATATCTGACGTTTTGTGACTTCCTTATTCACCCACTGATGAG
TACGTTTGTCGTCGATCAGCGAATCCTCAAGCTGATCATATGCGACATCT
ACTATCTAATGACTTTCTTGAGCTTGACGCCTGGCGCGGCATCTGAATCT
GCTGATTGTATCTGTATCGATAACAGCTGCTGAGCTTAGCTGACACATCC
GTCTTCTGTC
UFO02644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fusl-RF | 2908 | CG14021-RF | 1145..2210 | 5..1048 | 4800 | 97.7 | Plus |
| fusl-RE | 2754 | CG14021-RE | 991..2056 | 5..1048 | 4800 | 97.7 | Plus |
| fusl-RD | 2703 | CG14021-RD | 940..2005 | 5..1048 | 4800 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5331721..5332418 | 702..5 | 3475 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5331508..5331660 | 851..702 | 655 | 96.7 | Minus |
| 2L | 23513712 | 2L | 5331322..5331441 | 969..856 | 335 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:49 has no hits.
UFO02644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:45 Download gff for
UFO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14021-RA | 849..1923 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:42 Download gff for
UFO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fusl-RD | 936..2010 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:28 Download gff for
UFO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fusl-RD | 936..2010 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:28 Download gff for
UFO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5331263..5331446 | 852..1019 | 91 | <- | Minus |
| 2L | 5331508..5331660 | 702..851 | 98 | <- | Minus |
| 2L | 5331722..5332419 | 1..701 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:42 Download gff for
UFO02644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5331263..5331446 | 852..1019 | 91 | <- | Minus |
| arm_2L | 5331508..5331660 | 702..851 | 98 | <- | Minus |
| arm_2L | 5331722..5332419 | 1..701 | 99 | | Minus |
