UFO02645.5prime Sequence
1024 bp (911 high quality bases) assembled on 2009-01-14
> UFO02645.5prime
CAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACATCCTCCAG
CTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTACGACGTGGA
AAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACAGCTGGGCT
CGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGCTGAAGCTC
TACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCGAACAATAG
CTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGACCTGTTTT
CTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATTTTGAACGC
AATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACCAGGACCGC
CATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCGGAACACTG
AGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCGAGAAGCTG
CAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCGTACTCGTT
TGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCGTGATTTCT
TCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTACGGATGAA
TCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACACCTATGGGA
TCGGGTATTCAAGCTGGAGAAGGAAAAATCTACTACGAGGGTTCGGTGAG
ACAGCTTCAAGAGCTGAAGGCTGGCGTGGTCACTCTGTGCTCTATTTCGG
AGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAGCACAGCTGGA
GACAGGAGCCATTATTAGCGAACTGCTCACGAAATTAAACCCTCAATCGT
AAGACTCAGATGACGCACTGCTGCAATGCTGACGCAGCTCATCGAGACCC
CAAGACGATGAAGCGAGCACGCAAATCTGGCTAGATGATGGAGACGATCA
GTGCCCACAACGAGACGGTCCACG
UFO02645.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RB | 1880 | CG1814-RB | 490..1486 | 5..983 | 4485 | 97.8 | Plus |
| CG1814-RA | 1929 | CG1814-RA | 539..1535 | 5..983 | 4485 | 97.8 | Plus |
| CG1814-RC | 1673 | CG1814-RC | 283..1279 | 5..983 | 4485 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9580451..9580747 | 257..553 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 9580114..9580366 | 5..257 | 1250 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9580818..9581005 | 554..740 | 890 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9581064..9581203 | 738..875 | 600 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:45 has no hits.
UFO02645.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:44 Download gff for
UFO02645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RB | 374..1354 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:40 Download gff for
UFO02645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 281..1261 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:27 Download gff for
UFO02645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 281..1261 | 1..967 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:27 Download gff for
UFO02645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9580112..9580366 | 1..257 | 98 | -> | Plus |
| 2R | 9580452..9580747 | 258..553 | 100 | -> | Plus |
| 2R | 9580818..9581004 | 554..739 | 99 | -> | Plus |
| 2R | 9581066..9581206 | 740..877 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:40 Download gff for
UFO02645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5467617..5467871 | 1..257 | 98 | -> | Plus |
| arm_2R | 5467957..5468252 | 258..553 | 100 | -> | Plus |
| arm_2R | 5468323..5468509 | 554..739 | 99 | -> | Plus |
| arm_2R | 5468571..5468711 | 740..877 | 97 | -> | Plus |
