UFO02646.5prime Sequence
1034 bp (918 high quality bases) assembled on 2009-01-14
> UFO02646.5prime
CAGTCGACATGACGTTCAAATTGCGCTTAGCCTCGGTCTTCGCCAATCCG
AATTGTCTATTGGGACGCAGGATTCGCCACCAGTTTCTGGTCACCCTGCT
GCTGAACATAGCTACCTTCTCCCATGGCCTGGGCGTGGGTTGGATGTCGC
CGGTGATGAGGGACCTGCAGACCGATGAGTCGCCCCTTGATTTTCCCGTC
CTCGTGAGCCAGGTGTCCTGGATCGGATCGCTCGTGGGCATTGGCAGTGT
GATGGGCAATCTGATCGCCGGATTACTCATGGATCGCATTGGTCGCAAGA
TGGTCCTTTTCTTCATTGCGATTCCCTATACGACCTTTTGGTGCCTGATT
TACTTCGTCCAAAGTGTGGAGTTCCTGTACATCGGACGACTGATGGCCGG
CATAACTGGTGGTGCCTGCTACGTCGTCCTTCCGACCTTCATAAGCGAAA
TCGCCGACACCAATGTTCGCGGTCGCCTAGGCTCCATTATCTTACTATCG
GTGAACACGGGTGTTTTGGCGGGCTATATAGTGTCCACGAGAGTGGATTA
CTTTACGTCTCCCCCGTTCATCATCGGGCTGCCCGTCTGTTATTTTATCT
GCAACTTCCTCATTCCGGAAACCCCACATCACCTAGTTCGCAAGGGAAAA
TTCGAAGCGGCCAAGAGGTCGTTCATGTTCTACAAAAACATCACGAAAAA
TGACATCAAGGCTGAGGACGAGTTCGAAGAGATGAAGTATCTCCTTATTA
AGGAGCAGACGGAGAAGGCCAAGTCCTTCGACTACAGAGATTTCATACCA
GACCTGCATTTAAGGCCTACGCTTCTGCGCTGTCCTGCTTATTAGCAATC
ATTCAGTGCCAGTTTTGTGTGACCACTACTGGCGGACGTCTTTGCCGCAT
CCCCACACTCTGATCTGGGCATGTGCACCATCATCATCGAGTGCTCGATC
GTGGCACTACGTGACACTCTGGTTGTGGAATAGTACGAGAGATCCCATGC
TGACTCAACTGGGAGCTTCGTGCTAATGCTCGAC
UFO02646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3285-RB | 1595 | CG3285-RB | 35..1018 | 8..977 | 4520 | 98.3 | Plus |
| CG3285-RA | 1631 | CG3285-RA | 35..1018 | 8..977 | 4520 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3331612..3331943 | 464..795 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 3331118..3331347 | 103..332 | 1150 | 100 | Plus |
| 2L | 23513712 | 2L | 3331413..3331544 | 332..463 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 3330962..3331056 | 8..102 | 475 | 100 | Plus |
| 2L | 23513712 | 2L | 3332005..3332155 | 797..939 | 355 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:41 has no hits.
UFO02646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:09 Download gff for
UFO02646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-RA | 1..981 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:50 Download gff for
UFO02646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-RA | 26..1006 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:02 Download gff for
UFO02646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3285-RA | 26..1006 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:02 Download gff for
UFO02646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3331612..3331943 | 464..795 | 99 | -> | Plus |
| 2L | 3330953..3331056 | 1..102 | 97 | -> | Plus |
| 2L | 3331118..3331347 | 103..332 | 100 | -> | Plus |
| 2L | 3331414..3331544 | 333..463 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:50 Download gff for
UFO02646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3330953..3331056 | 1..102 | 97 | -> | Plus |
| arm_2L | 3331118..3331347 | 103..332 | 100 | -> | Plus |
| arm_2L | 3331414..3331544 | 333..463 | 100 | -> | Plus |
| arm_2L | 3331612..3331943 | 464..795 | 99 | -> | Plus |
