UFO02648.5prime Sequence
832 bp (682 high quality bases) assembled on 2009-01-14
> UFO02648.5prime
CAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAATTTCAAGCG
GAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGGACTGGGGA
CCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACACTTGGGAA
GCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCGGCGTACAG
TGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTTGTGGTGCT
GCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCATTTGCATC
CCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGCAGGGACTG
ACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGCGGCATGAC
GCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCCCAAGGATG
TGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCCTGCTCAAA
TGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCTCTCGTCGA
AACGGTGCATAGTGATATTGCCAGCGAGAAACCCGGTCTATTCGATGTAT
TCCGGGAGGGAAGTCTGCGCTTGTTTATTGGAGCTCTCCGCAAAAGGGCC
GTATGCTACCAGCCTGGGCTCTATCGGCCAGTGTCTCCATGGCATCAGCA
GTATCTGATTTATTTGCGGGAATACGGGCGTGTCTCACGCTTAATGCGGC
TTCGTATAAAGCATTCCCAGGTACGCAGGTGGAATGTATCAGAACCCACG
CTGACACGAATGCGAAATCATGGCAGCTATGC
UFO02648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8931-RA | 1454 | CG8931-RA | 149..952 | 9..803 | 3505 | 96.8 | Plus |
| CG5755-RA | 1553 | CG5755-RA | 395..807 | 186..598 | 385 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15984188..15984538 | 152..502 | 1755 | 100 | Plus |
| X | 23542271 | X | 15984593..15984868 | 502..771 | 810 | 92.1 | Plus |
| X | 23542271 | X | 15984014..15984127 | 41..154 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 18096962..18097374 | 186..598 | 370 | 72.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:08 has no hits.
UFO02648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:06 Download gff for
UFO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 143..812 | 2..673 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:20 Download gff for
UFO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..814 | 2..673 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:13 Download gff for
UFO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..814 | 2..673 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:13 Download gff for
UFO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15984014..15984127 | 41..154 | 100 | -> | Plus |
| X | 15984191..15984538 | 155..502 | 100 | -> | Plus |
| X | 15984594..15984765 | 503..673 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:20 Download gff for
UFO02648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15878047..15878160 | 41..154 | 100 | -> | Plus |
| arm_X | 15878224..15878571 | 155..502 | 100 | -> | Plus |
| arm_X | 15878627..15878798 | 503..673 | 98 | == | Plus |
