UFO02649.5prime Sequence
1006 bp (917 high quality bases) assembled on 2009-01-14
> UFO02649.5prime
CAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACTGGTTGCTG
TGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCGTCAGTTGA
CTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTCGGATGTAA
TCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAAGGCCCCGT
CCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCCCTCAATCC
GGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCTAAGGAACT
CGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATGGCTGGGCG
GGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCCTACCTGTC
CCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCAGTCGTTGG
ACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAGCTGCCAAT
GTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTTCCCTACGA
GCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTCTGGATTGA
CTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCGCCTTGGAT
CCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGGCTGGACGT
CAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAACGCTGCTCG
GCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCAACTGGGGC
CTCGGGCAGCCACATTGTCCCAACGCCACGCACGGAGTTTGATTTTGTCT
GCGACACTTCGCGGCATGTTCTACTTGCCGAGTCAGTCCGGCAACGAAAT
CATTGCGCATGCGCTGCAGCTCAGCGAAATCGTGCTATCGCCACTGCACT
GCACGTCGAGCACGAAAATATGCAGTCATAATGCACCGCACGGTCATGCG
GTACGG
UFO02649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxe2-RB | 1627 | CG4979-RB | 273..1272 | 9..988 | 4510 | 98 | Plus |
| sxe2-RA | 1583 | CG4979-RA | 229..1228 | 9..988 | 4510 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16086184..16086800 | 325..932 | 2690 | 98.4 | Plus |
| 3R | 32079331 | 3R | 16085878..16086122 | 85..329 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 16085733..16085808 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:01 has no hits.
UFO02649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:41 Download gff for
UFO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1228 | 3..988 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:22 Download gff for
UFO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1228 | 3..988 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:21 Download gff for
UFO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1228 | 3..988 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:21 Download gff for
UFO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16085729..16085808 | 3..84 | 95 | -> | Plus |
| 3R | 16085878..16086121 | 85..328 | 100 | -> | Plus |
| 3R | 16086188..16086867 | 329..988 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:22 Download gff for
UFO02649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11911451..11911530 | 3..84 | 95 | -> | Plus |
| arm_3R | 11911600..11911843 | 85..328 | 100 | -> | Plus |
| arm_3R | 11911910..11912589 | 329..988 | 97 | | Plus |
