UFO02654.5prime Sequence
1018 bp (922 high quality bases) assembled on 2009-01-14
> UFO02654.5prime
CAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACACGTTCCCC
AAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAACTGGAGCC
CAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCTGATGGGAA
TGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCCACAAGATG
TCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATCGTGAAGGA
CGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGACTTCCCCG
GCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGATCTTTGGA
GGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGACTACAACGA
GGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAAAGTGAACA
AGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAATTAGCGAC
GACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCGTCGGATGA
CCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCATCTGACCT
CCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGGTGCAGAAG
CTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATTTTTATACC
AAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTCCAAAATTT
ACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATGAGCTCTGC
TGCGATATGATTGACGTGTCATTGATCTGTCCAGCATATACAGCTCCGAA
GAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAGTTAACAACAACAC
GATACTCTACTGCGGAGGTGACAGTCTGCCTGTCTGCATCTGCCGAGAGA
ACTCACGCAGCGTCATCGACTACATCATCTGTTCCGGGACGCCATCAGGA
GTATCAGCTGCGCTAGGC
UFO02654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagC-D-RA | 1558 | CG8707-RA | 176..1192 | 8..998 | 4480 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8162768..8163241 | 484..11 | 2370 | 100 | Minus |
| 2R | 25286936 | 2R | 8162488..8162708 | 701..481 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 8162286..8162428 | 843..702 | 665 | 99.3 | Minus |
| 2R | 25286936 | 2R | 8162155..8162227 | 910..841 | 220 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:54 has no hits.
UFO02654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:38 Download gff for
UFO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8707-RA | 182..1095 | 1..910 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:05 Download gff for
UFO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1082 | 1..910 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:19 Download gff for
UFO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1082 | 1..910 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:19 Download gff for
UFO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8162155..8162224 | 844..910 | 95 | <- | Minus |
| 2R | 8162286..8162428 | 702..843 | 99 | <- | Minus |
| 2R | 8162488..8162706 | 483..701 | 100 | <- | Minus |
| 2R | 8162770..8163243 | 8..482 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:05 Download gff for
UFO02654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4049791..4049933 | 702..843 | 99 | <- | Minus |
| arm_2R | 4049660..4049729 | 844..910 | 95 | <- | Minus |
| arm_2R | 4049993..4050211 | 483..701 | 100 | <- | Minus |
| arm_2R | 4050275..4050748 | 8..482 | 99 | | Minus |
