UFO02656.5prime Sequence
1062 bp (946 high quality bases) assembled on 2009-01-14
> UFO02656.5prime
CAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGACCCAGAACT
AAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGTGACCTTCA
CCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCTCATCGCAA
CGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACGACTCGGTT
AACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAAACGACCAA
GGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCACGCCCACA
TCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATTCAGATGAT
GGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCTACGGTGGC
GATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGAATCGTTAT
CCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCCCCGATTCG
TCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGCCAGAATGT
TAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGGCCTCCCGT
CGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGAGGAACCGG
AGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGCAAGCATCC
ACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTACATCTTCG
ACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGAGGTATGGG
CCCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCACAATCTCACCGTG
CAGCGGGCTCCAGCATTCACCTGAACTGCAGGATCTCACTGCTGCAGGAT
AGACTGTCTCTTGGGTGCGCACAACACGCAGACGAGGGCAAGACATGCAC
GCCCTGACTGCTGACAGTGGGCATGCCACGTATACGGGTGATAAGCGCTA
CAAGATGGAGTCAGTACCCAACACTGGGACTGAGATAACAATGGTGAAGA
GGACAGCGAGCT
UFO02656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr20-RA | 2717 | CG12191-RA | 579..1638 | 9..1050 | 4770 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 854585..855044 | 795..336 | 2300 | 100 | Minus |
| 3L | 28110227 | 3L | 856343..856670 | 336..9 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 854301..854406 | 901..799 | 400 | 96.2 | Minus |
| 3L | 28110227 | 3L | 854029..854083 | 1011..958 | 225 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:53 has no hits.
UFO02656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:36 Download gff for
UFO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 570..1611 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:15 Download gff for
UFO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1620 | 9..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:16 Download gff for
UFO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1620 | 9..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:16 Download gff for
UFO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 854296..854410 | 794..905 | 95 | <- | Minus |
| 3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| 3L | 856343..856670 | 9..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:15 Download gff for
UFO02656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 854296..854410 | 794..905 | 95 | <- | Minus |
| arm_3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| arm_3L | 856343..856670 | 9..336 | 100 | | Minus |
