UFO02657.5prime Sequence
1118 bp (1008 high quality bases) assembled on 2009-01-14
> UFO02657.5prime
CAGTCGACATGCTGACCCGCGTGTTCCGCCTAGTGCACGACAGGCGCCTG
AGTGTGCCTGTCCTGCGTTGCTTCCACCACGAGTTCTCCAAGCCGCCACA
ACAGGCAGCGAAGGGCCAGGAAATCGAAGGCAATCCCGAAAAGACTTTGG
TTGCCGGCGTGCAAGACAAGTACAAAATATTCCGCGATGAGGAAGCCACG
GAGATTTTTGATGTGGAAGAGGCACGCCACCAGGAGCAGCAACTTCCAGA
GCCGGACCTGGAGCTGGATCACTATTACGGCCTCAATTTAAAGCGAGGTG
TTCGCGGAGTGTTCGACGTTGAGGACTTGGTGGAGCTGCTCCGCAAGGAG
AATGTGGACGACATATTCGTCTGCTACGTGCCGGAGAACCTGAAGTACGT
TGACCACCTGGTGGTTTGCAGTGGTCGCAGTTACCGACACATGCTGTCCA
CCGCGGAGTTCGTGCGCCGAATGTTCAAGATCAAGCGGGGCAAGGGTGAC
ATATTGCCGCGCATCGAGGGCGATAAGAGCCGGGATTGGATGGCCATGGA
CTTGGGCAACATTGCCCTGCACATATTTTCACCGAGTGCTCGCGAGGAAT
ACGATCTGGAGTCGCTGTGGGCCATTGGCTCCGAATTCGACCGCGAAAGC
CAAAAACCCACCAATCCCTATGGCGATATTTTCATGGCTCAAACACCCCT
TTCTTTCGTAGACAAATCGAAACTAAAGACGGCAAGCTTTCTAGACCATT
CGTTTGGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATTC
AGATGGAGTTCTGAGTCATTACTGGATCTATCACAGGAGTCAAGCGAGCT
CGATATCAATACGCCCCGCCTGCCACTCATCGCAGTACTGTGTAATCATA
GCATTCTGCGACTGAGCATCAAACGCATGATGACTGAATCGCACGGCATC
AGAACCTGTCGCTTGGCATATAATTTGGCATGTGAACGGGGCAAATGCAT
TGGCAGTTATCAACTGTA
UFO02657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 312-RB | 873 | CG9166-RB | 71..793 | 9..731 | 3615 | 100 | Plus |
| 312-RA | 1618 | CG9166-RA | 71..793 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1351186..1351472 | 9..295 | 1435 | 100 | Plus |
| 3L | 28110227 | 3L | 1351529..1351790 | 295..556 | 1310 | 100 | Plus |
| 3L | 28110227 | 3L | 1351852..1352028 | 555..731 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:56 has no hits.
UFO02657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:35 Download gff for
UFO02657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 312-RA | 41..773 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:17 Download gff for
UFO02657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 312-RA | 64..796 | 1..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:30 Download gff for
UFO02657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 312-RA | 64..796 | 1..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:30 Download gff for
UFO02657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1351853..1352031 | 556..735 | 98 | == | Plus |
| 3L | 1351179..1351471 | 1..294 | 98 | -> | Plus |
| 3L | 1351529..1351789 | 295..555 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:17 Download gff for
UFO02657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1351853..1352031 | 556..735 | 98 | == | Plus |
| arm_3L | 1351179..1351471 | 1..294 | 98 | -> | Plus |
| arm_3L | 1351529..1351789 | 295..555 | 100 | -> | Plus |
