UFO02662.5prime Sequence
969 bp (842 high quality bases) assembled on 2009-01-14
> UFO02662.5prime
CAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGCGCATCTCG
AAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGATGTCGAGCA
GTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTTCGCGGATA
AACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGAAGACCAAG
GCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCCAAGAAGCC
CATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCAAGATCCCA
TTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTAACATCGAG
CTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCCAACAGCGA
TCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGACAAGAAGA
ACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGGATTTTCGC
GACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGTCGCGAACT
GGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAAAACTCACG
CTAGTCTGCACCACAAACCACCAAAGCCAAGAAATTCGAACTCCCGCATC
CGGGCATGAGCTACAATCCCGCACCCGAGGATCATCATGCGCTTATTGAT
CAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACAGCACCTTAA
GCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGGAGAGAGATC
GTCGTCGCCTAAATGAAATGAGCCAAGGCATGACGAGGAGGAGGTAGGGA
GCTCGATGAGATGTCCAAACGAATGCAAGAAAAGGAGGACGATGATGAAA
GCATATCCACATCACCGCTCCGTGGGAAAACAAAAGAAGAGCAGCAGCTC
GCCGCACGAGCTCAGCAAA
UFO02662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1785-RA | 1885 | CG1785-RA | 94..1069 | 9..969 | 4385 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8715451..8715773 | 310..631 | 1565 | 99.7 | Plus |
| X | 23542271 | X | 8715835..8716109 | 631..900 | 1085 | 96.4 | Plus |
| X | 23542271 | X | 8715221..8715395 | 136..310 | 875 | 100 | Plus |
| X | 23542271 | X | 8715029..8715156 | 9..136 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:44 has no hits.
UFO02662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:31 Download gff for
UFO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 71..1051 | 1..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:10 Download gff for
UFO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..1066 | 1..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:09 Download gff for
UFO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..1066 | 1..966 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:09 Download gff for
UFO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8715021..8715156 | 1..136 | 97 | -> | Plus |
| X | 8715222..8715395 | 137..310 | 100 | -> | Plus |
| X | 8715452..8715772 | 311..630 | 99 | -> | Plus |
| X | 8715835..8716140 | 631..927 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:10 Download gff for
UFO02662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8609054..8609189 | 1..136 | 97 | -> | Plus |
| arm_X | 8609255..8609428 | 137..310 | 100 | -> | Plus |
| arm_X | 8609485..8609805 | 311..630 | 99 | -> | Plus |
| arm_X | 8609868..8610173 | 631..927 | 95 | -> | Plus |
