UFO02665.5prime Sequence
1079 bp (1000 high quality bases) assembled on 2009-01-14
> UFO02665.5prime
CAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCACCAGTTTG
ACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGTGCACGCCT
GCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCTGTATCTGG
AGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCACCAAGGAG
TCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCAATGAGCAC
TCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGACGGATGAGG
TGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGAGCTTGAAG
GCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCCAGCAACAA
GATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGCGCCCACAG
TGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATGGCATCTGG
CAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCCTCCGCCGA
TCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCTTTTGCAGT
ACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATCAGCAGCGA
GATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATCTGGCAGGC
GGCCGTCAACTGGGAAGTGCCCAAGAATGGCCATTCTTCAGAGGAGGAAC
TGGACGACAGTGATGAGCAGGTGGAAGATCGCGATCGTGTGGACACCTTA
CGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTTTCAGTCGT
GGTGGCCGCCGATTGCTCTCTTCGATGGATCAAATCATCACGGGCAGCTG
GGATCGGACTGCCATCCTGTGGGACGTGAGACTGGCCTGCACTGCAGCCG
CTCACTGGGCACGACCACGAGCTCCCCACGTGTCGCACATCCACCAGCGC
CTGTGTCACCGCTCAGGAAACTACGTCGTCTATGGGACTTCCGAAAGCCA
TCCAGCGTCTCCGTCTTCCAAGCCCACGA
UFO02665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12333-RA | 2167 | CG12333-RA | 249..1330 | 8..1072 | 4945 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18401631..18402193 | 725..163 | 2815 | 100 | Minus |
| 3R | 32079331 | 3R | 18401310..18401574 | 985..725 | 1110 | 98.1 | Minus |
| 3R | 32079331 | 3R | 18402314..18402468 | 162..8 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:27 has no hits.
UFO02665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:29 Download gff for
UFO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 246..1332 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:40 Download gff for
UFO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 249..1335 | 8..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:53 Download gff for
UFO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 249..1335 | 8..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:53 Download gff for
UFO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18401202..18401574 | 725..1078 | 93 | <- | Minus |
| 3R | 18401632..18402193 | 163..724 | 100 | <- | Minus |
| 3R | 18402314..18402468 | 8..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:40 Download gff for
UFO02665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14228036..14228190 | 8..162 | 100 | | Minus |
| arm_3R | 14226924..14227296 | 725..1078 | 93 | <- | Minus |
| arm_3R | 14227354..14227915 | 163..724 | 100 | <- | Minus |
