UFO02671.5prime Sequence
1111 bp (982 high quality bases) assembled on 2009-01-14
> UFO02671.5prime
CAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGATTGGCCAGC
GCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACCACCATCAC
CACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTTCGCAACCA
CTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGCTCACAGAG
ATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACCGACAAGGA
TGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCTCACTGAGG
ACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAGGCAACAGC
AAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCCATCCTGAA
GTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGGGAACACAG
GTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCCTTTCTCTA
GCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGCATTGCTGT
CGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGCCAGAGAGG
TGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTTGCCACATC
GGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTGCGTTACGG
CAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGCCACCGGTC
AGTGCTGGACCTTATGTCCAACTTCAAGAAAGACAACACCGGCTACCACA
TGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTGTCACGAAGC
TTTCGATGCTCTGCCCCATTCCTCGCGAGCGTGAACGTGGCTTCATCGGC
CTGACTCTTCGACGATGTGCTGAGACTTTTGTCAGTGCAGCGTATCTGGG
CGAGATTCTAGCTCTGCAGCTGATTGACGAGCGGCTTGAACACCGCCTCG
AGCAGTTCAGGTCTGACTCCCCATTCGGGATTTCCCTTTTTATTGCTCAT
CGAACTCGGGCAGCAACGGTGACACGACGGGGGATCACCGTTCTATTTGG
GACTCGTATGA
UFO02671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3835-RA | 1987 | CG3835-RA | 309..1404 | 9..1079 | 4795 | 97.2 | Plus |
| CG3835-RC | 1966 | CG3835-RC | 288..1383 | 9..1079 | 4795 | 97.2 | Plus |
| CG3835-RB | 1862 | CG3835-RB | 184..1279 | 9..1079 | 4795 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2143525..2144210 | 341..1009 | 2640 | 97.1 | Plus |
| X | 23542271 | X | 2143057..2143248 | 9..200 | 960 | 100 | Plus |
| X | 23542271 | X | 2143309..2143453 | 199..343 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:41 has no hits.
UFO02671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:33 Download gff for
UFO02671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RA | 256..1362 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:39 Download gff for
UFO02671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RB | 176..1282 | 1..1082 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:25 Download gff for
UFO02671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RB | 176..1282 | 1..1082 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:25 Download gff for
UFO02671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2143049..2143248 | 1..200 | 98 | -> | Plus |
| X | 2143311..2143452 | 201..342 | 100 | -> | Plus |
| X | 2143527..2144220 | 343..1016 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:39 Download gff for
UFO02671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2037082..2037281 | 1..200 | 98 | -> | Plus |
| arm_X | 2037344..2037485 | 201..342 | 100 | -> | Plus |
| arm_X | 2037560..2038253 | 343..1016 | 96 | -> | Plus |
