UFO02672.5prime Sequence
1107 bp (985 high quality bases) assembled on 2009-01-14
> UFO02672.5prime
CAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAA
GTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGCATCGAGGG
ACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCAGCACACTT
ACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGGAGAAACTA
TATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAGGATCTGGA
GACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCACTCGCTCG
ACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCGCATTTGAC
GAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCCCAGATCAA
GACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCAGGCAGTGC
GTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGAAGGCCAAG
GAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGTCCCTCCCT
GGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGGAATTGGCA
GTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACACCGGCATC
ACCTCCATCGATGTGGACACCAAATCCAAGGCGGCTGCCAGTAAACCAGC
TTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGTCGATAGTT
TCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATCTGGCACCG
GCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGTGCAGCGGC
CAAGGCAGCTATCGCGTCGACATTCACAAAGAGAGCGTACATCTGAAGAT
TGAGACAGCTAGTAGTGCGTCTGGGACGCGATGGTGCGTGCAGCAGTTCG
AGACTCGGGCCTCCTGACGTTGCGCATTACGGACGAGCTACGGACGCATT
TGCTGAGCTGTCCTCCAACCACACCACAGGTCCTGCAGTGCAGACCCACC
TCACGTGGACAAGGACTGTTCAGTCCGCGCACATACATCGGACTAAGAAC
TGGCAAG
UFO02672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1298 | 9..1101 | 5040 | 98 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1295 | 9..1101 | 4985 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 688..275 | 2070 | 100 | Minus |
| X | 23542271 | X | 1861156..1861381 | 275..50 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860427..1860624 | 885..689 | 940 | 99.5 | Minus |
| X | 23542271 | X | 1860150..1860372 | 1096..884 | 410 | 89.3 | Minus |
| X | 23542271 | X | 1861446..1861486 | 51..11 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:45 has no hits.
UFO02672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:33 Download gff for
UFO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1308 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:32 Download gff for
UFO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1308 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:13 Download gff for
UFO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 187..1306 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:13 Download gff for
UFO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1860427..1860624 | 689..885 | 99 | <- | Minus |
| X | 1860686..1861098 | 276..688 | 100 | <- | Minus |
| X | 1861156..1861379 | 52..275 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:32 Download gff for
UFO02672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1754460..1754657 | 689..885 | 99 | <- | Minus |
| arm_X | 1754719..1755131 | 276..688 | 100 | <- | Minus |
| arm_X | 1755189..1755412 | 52..275 | 100 | <- | Minus |
