UFO02673.5prime Sequence
900 bp (754 high quality bases) assembled on 2009-01-14
> UFO02673.5prime
CAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACACCAGGTGG
TACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGTATGGTGGA
CTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACATTATGAAGG
AGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAACGGGAGCGA
CATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAAAAGGACAA
GGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGACCGCGAGC
ACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAAGCAAGTCG
GAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAACATCGTGA
AGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGAGGTGGCTC
GCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCGAGAAGAAG
CTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTGCAGCGAAC
CCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCATCACATGC
GCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATCTGGTGCGA
ACGCCGGACTTCACGTGGAAGGGGTCAAGCGAAATTTGCGGAAGGATCAT
CGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGAGCGAAAATT
CACGAGCACATTGACATCTGATGAGAGGAGAGGGAGCGATTCCGCGAATG
CCTCGACGAGATAGCACTCTTTCAGCTACTAGCACTGGAAAGAGAATAAG
AGCTGATCCAAGAAGATCCGCGGATACTAAAATACCATCGGACAAGGGCG
UFO02673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 2283..3183 | 9..900 | 4055 | 97.7 | Plus |
| CG42724-RI | 4036 | CG42724-RI | 2730..3630 | 9..900 | 4055 | 97.7 | Plus |
| CG42724-RC | 3688 | CG42724-RC | 2382..3282 | 9..900 | 4055 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6362837..6363209 | 381..9 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 6362399..6362763 | 744..381 | 1745 | 99.2 | Minus |
| 3R | 32079331 | 3R | 4486966..4487126 | 6..166 | 310 | 79.5 | Plus |
| 3R | 32079331 | 3R | 6362171..6362326 | 900..752 | 210 | 84.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:23 has no hits.
UFO02673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:22 Download gff for
UFO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-RA | 913..1819 | 1..900 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:10 Download gff for
UFO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RH | 384..1290 | 1..900 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:52 Download gff for
UFO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RC | 2376..3282 | 1..900 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:52 Download gff for
UFO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6362399..6362763 | 381..744 | 99 | <- | Minus |
| 3R | 6362838..6363215 | 1..380 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:10 Download gff for
UFO02673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2188121..2188485 | 381..744 | 99 | <- | Minus |
| arm_3R | 2188560..2188937 | 1..380 | 98 | | Minus |
