UFO02676.5prime Sequence
957 bp (832 high quality bases) assembled on 2009-01-14
> UFO02676.5prime
CAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGAGTGCCAGT
CCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGATGAAGTTCC
GCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGCCATGACCT
TGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGCGCTCCAAA
TTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAACATGCGGA
ATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGCGCTGCGAT
TGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGACTGACTTT
AATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCTCTTAACTA
CTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCTAGAAAAAC
ACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTTTCAATTCC
GATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCCAAATGGAA
CAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTGGATAAATC
CTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTCAGTTCCGC
TATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCATTGCCGTTTGAA
AGATCCAATTTGACCATGATGATTATCTTACCAACTGCTATTGATGGCTT
GCCCGAATTGGAGGAAAACTTGGTCACTGGACATGAACGAGTAGGCCGCC
AAAGTCTAATGAGGAGTGGATGTACCATTCCAATTCAGGATCGAGTGCAC
TTGTTGATCTAAGGTCACTACAAAGATGGGTTATTGTGTTTTGGTTGCTG
GACAGCGGATTTGAGCGATCTTTTTCGATTGAAACACACCATAGATTCCG
GAGGCTA
UFO02676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn47C-RC | 3114 | CG7722-RC | 77..1043 | 9..957 | 4175 | 96.8 | Plus |
| Spn47C-RB | 1351 | CG7722-RB | 77..1043 | 9..957 | 4175 | 96.8 | Plus |
| Spn47C-RA | 1356 | CG7722-RA | 82..1048 | 9..957 | 4175 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10940737..10941588 | 851..9 | 3820 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:46 has no hits.
UFO02676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:19 Download gff for
UFO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7722-RA | 79..1026 | 9..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:07 Download gff for
UFO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn47C-RA | 79..1026 | 9..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:01 Download gff for
UFO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn47C-RA | 82..1029 | 9..941 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:01 Download gff for
UFO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10940698..10941588 | 9..886 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:07 Download gff for
UFO02676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6828203..6829093 | 9..886 | 97 | | Minus |
