UFO02677.5prime Sequence
974 bp (851 high quality bases) assembled on 2009-01-14
> UFO02677.5prime
CAGTCGACATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGGCCCCAGTT
GCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGCCAGCTTGT
CCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGCCACCCAAAA
TTCTGATCACAGGTGGCTTGGGCCAGTTGGGCATCGAGTGCGCCAAACTC
CTGCGGACGCAGTATGGCAGCCAAAACGTGATCCTCTCGGACATTATAAA
GCCCAGTCAGTCGGTACTGGAGAATGGTCCCTACATTTTTGCCGACATCC
TGGACTTCAAGGGTCTCCAGAAGATCGTTGTGGACCATCGCATTGACTGG
CTGATCCATTTCTCGGCCCTGCTGAGTGCGGTGGGAGAGCAAAATGTTCC
ACTGGCTGTGAGGGTCAACATCGAGGGTGTCCACAACGTCATCGAGCTGG
CGAAGCAGTATAAGCTCCGCATCTTCGTACCAAGCACAATCGGAGCCTTC
GGTCCCGACAGTCCTCGCAATCCCACGCCGAATGTTACGATCCAACGGCC
GCGCACCATTTACGGCGTTTCCAAGGTGCACGCCGAGCTGATTGGCGAAT
ACTACTACCACAAGTTTGGACTGGACTTCAGATGCCTGCGCTTCCCAGGA
GTGATTTCCAGTGATCCGCCGGGCGGCGGCACCACAGATTACGCTGTGGC
CGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCTACCTGCGTC
CTGACACAAGACTGCCCATGATGTACAATTGAAGATTGTTTGCGGCTCTC
CTCGAGTTCATGCTGCTCCCACGACAGCTGAAGCGCGCGTCTACAACGTG
ACCGCCATGTTCTTCACTCCGAGGGCTGTTCGCCAGCTGGGCAGCACGTG
CCCATCTGCACGTGACCTACAGCAGATAGCCCCAGTTGATCGCAACGCCT
GCGAGTTCCATGACTCCGAGGCCC
UFO02677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5955-RA | 1314 | CG5955-RA | 69..1024 | 9..951 | 4395 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20467716..20467969 | 160..413 | 1270 | 100 | Plus |
| 3L | 28110227 | 3L | 20467012..20467167 | 9..164 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 20468312..20468460 | 539..687 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 20468125..20468253 | 411..539 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 20468964..20469072 | 686..795 | 500 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:20 has no hits.
UFO02677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:18 Download gff for
UFO02677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 54..1020 | 1..951 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:09 Download gff for
UFO02677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 58..1024 | 1..951 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:50 Download gff for
UFO02677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5955-RA | 58..1024 | 1..951 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:50 Download gff for
UFO02677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20468127..20468253 | 413..539 | 100 | -> | Plus |
| 3L | 20468313..20468460 | 540..687 | 100 | -> | Plus |
| 3L | 20468966..20469071 | 688..793 | 98 | -> | Plus |
| 3L | 20467001..20467165 | 1..162 | 97 | -> | Plus |
| 3L | 20467719..20467968 | 163..412 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:09 Download gff for
UFO02677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20460101..20460265 | 1..162 | 97 | -> | Plus |
| arm_3L | 20460819..20461068 | 163..412 | 100 | -> | Plus |
| arm_3L | 20461227..20461353 | 413..539 | 100 | -> | Plus |
| arm_3L | 20461413..20461560 | 540..687 | 100 | -> | Plus |
| arm_3L | 20462066..20462171 | 688..793 | 98 | -> | Plus |
