UFO02683.5prime Sequence
952 bp (806 high quality bases) assembled on 2009-01-14
> UFO02683.5prime
CAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCATTTCGGGC
GCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGCGAGATGTT
CATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGACAAGCCGC
AGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCCTGGTGTCC
TTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCAGCTGCCAC
GGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGATAAGTTCG
TGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCTTCTTGGGC
TTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTCCTGTTGCC
CACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAACTATAACT
CCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTGGGACCTCC
TTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTGGCGGTATT
CTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCTGGAGGTGG
GACAATCCTTTATTATTGCACGCTCCATTCTGGTCTTCAATGCCATTGAA
CTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATTTACTTCAT
GCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAACAAATATC
CATCGCAGTGTTTTGTTGGGGACACCTACTGCTACTTTGCCGGCATGACT
TTCGCCGTGGTTGGAATCCTGGGCCACTTCAAGCAGACGCTGCTGCTCTT
CTTCTGCCGCAAATCTGAATTTCTGTACTCCACGCCGCAGCTGTCCACTT
GTGCATTGTCCCCGTCACCGGCTGCCCAGACGACGCAGACCGATCTGTTC
AA
UFO02683.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5287-RA | 1557 | CG5287-RA | 231..1156 | 8..928 | 4340 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13180159..13180395 | 509..745 | 1170 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13179885..13180102 | 295..512 | 1090 | 100 | Plus |
| 2L | 23513712 | 2L | 13179477..13179623 | 8..154 | 735 | 100 | Plus |
| 2L | 23513712 | 2L | 13179683..13179824 | 155..296 | 710 | 100 | Plus |
| 2L | 23513712 | 2L | 13182907..13183094 | 746..928 | 540 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:28:36 has no hits.
UFO02683.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:23 Download gff for
UFO02683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 223..1181 | 1..947 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:04 Download gff for
UFO02683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1179 | 1..947 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:04 Download gff for
UFO02683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1179 | 1..947 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:04 Download gff for
UFO02683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13180161..13180395 | 511..745 | 99 | -> | Plus |
| 2L | 13182907..13183117 | 746..947 | 91 | | Plus |
| 2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| 2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| 2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:04 Download gff for
UFO02683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| arm_2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| arm_2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
| arm_2L | 13180161..13180395 | 511..745 | 99 | -> | Plus |
| arm_2L | 13182907..13183117 | 746..947 | 91 | | Plus |
