UFO02684.5prime Sequence
979 bp (849 high quality bases) assembled on 2009-01-14
> UFO02684.5prime
CAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTTCCCCGAAC
AACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGATTCCGTGAC
TCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGAGTACGTGC
GCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCCGATATGGG
CGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAACTGACCCT
GGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCAGTTGACCA
AGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCTATCCCTTC
GTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTCCAGCAGAA
GGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGTAAAGATCT
TTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCACCATTAAC
CTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGCATCCAGCC
CTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGAGCTCGAAC
TGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGAAGATCTCG
GTGAACATCTGCGTGCGCAACAACTCCAACAAGTGGTGAAGAAGATCAAG
GCCATGGTGCAGCAGGCGTCGATGTGGTCCTGTTCCAGAACGGTCAGTTC
CGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTCCCCTGAACCC
GGGATCCAGCCTGCAGAAGTCATGTATCTGGTGCCAACCTGGTGGCAATG
CGACGCGCAGCATCGCGTGAGGGTGATATCAGCGCAAGACACAGCTCTGC
TCGAACCAACTATTGCAGTCAGGATGCAGGGATGCTTGCATAATTGTTTC
ATGCTGTGAGTCAGCTTTCTGGGAGCCTG
UFO02684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr1-RB | 2327 | CG5711-RB | 120..1092 | 9..959 | 4285 | 97.4 | Plus |
| Arr1-RA | 1435 | CG5711-RA | 120..1092 | 9..959 | 4285 | 97.4 | Plus |
| Arr1-RC | 1356 | CG5711-RC | 150..1013 | 118..959 | 3740 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18078915..18079640 | 117..839 | 3465 | 99.4 | Plus |
| 2L | 23513712 | 2L | 18078388..18078496 | 9..117 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:24 has no hits.
UFO02684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:23 Download gff for
UFO02684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 113..1107 | 1..968 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:38 Download gff for
UFO02684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1104 | 1..968 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:53 Download gff for
UFO02684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1104 | 1..968 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:53 Download gff for
UFO02684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| 2L | 18078916..18079723 | 118..910 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:38 Download gff for
UFO02684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| arm_2L | 18078916..18079723 | 118..910 | 97 | -> | Plus |
