UFO02685.5prime Sequence
975 bp (887 high quality bases) assembled on 2009-01-14
> UFO02685.5prime
CAGTCGACATGCAAAACGACAAGTATCCAGCGCCAATAGGCTTTTATCCA
CCACAAGGACAGCCGGGATATCCACAACCAGCGTCACAGCCAGGATACCC
TCAGCCAGGGCAGCCGCAACACATCACACCGGCGGAGACATACGGACCAC
AACCACCGCCAATGCCACCGCGGGATCCACACACCAGAGTGGATCCACCA
GGAGGATGCTTTCAGCGCAACCAAAAGAACAAACCTCAATCCAATGCTGT
GGGCGCAGCTGGTCTCATCTTTATCTCTGGAGGTATGAACATAGCGTGGG
CGATTGGCTTCCAAGGACCAATCTATTACCAAACCACCAAGCACAATTAC
ATTGCCTGGTTCATAGGCGCCATTATTGGAGCTTTGGTTACGATGGCGCT
GACCAACAAGGTGGCCAAAAAATATATTCTGCAATTTTCTTCAGTGTTGG
TGACCGTCGGTGGATTGGTTATTGCCTGCACCCACAATAATGGAGCTGGA
ACCACGGCAGCTTGTTACCTAGATGGTATTGCCAATGGTCTGGTATTTGC
CCCATTTATGGCGTTGGTCGGAGAGATCTCGGTTCCCTATTTGAGGGGCA
AGGCCAGTGCCACCTTGGAGCAATTGTGCTTTGGAACCGGTATACTTCTT
CAGATCCTTTATGTGTCAAATTGGACATATTCTTCGTATATGACATACAA
TGATTTTACGTCCGAGAATATGAAAGGAGTGCTGAGCACAATCTACGCGT
TTTGGCCCTTATTATGGGCTCATTTTTTACCATCGAATCGCCGGTTCTAA
TGCTGGCCATTACGAAGAACAGCGGCCATTGACGCACTGCGTCGCTACAA
AAGCCTGCGGTGCTAACCGAGAACTTACGAGCTTCTGGCGGAGCACAAAC
GCTACTGCTACAACAGAATATGTCAAGAGTGAAGCATTTCAAGCGCTGCA
ACTTCATGCACTGCACTGCGCCCTG
UFO02685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42825-RA | 1752 | CG42825-RA | 114..1081 | 8..959 | 4450 | 98.1 | Plus |
| CG32054-RA | 1775 | CG32054-RA | 365..775 | 225..635 | 245 | 71.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10096488..10096969 | 906..431 | 2130 | 98.5 | Minus |
| 3L | 28110227 | 3L | 10097752..10098002 | 258..8 | 1255 | 100 | Minus |
| 3L | 28110227 | 3L | 10097030..10097205 | 431..256 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:38 has no hits.
UFO02685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:14 Download gff for
UFO02685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6640-RA | 1186..2149 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:44 Download gff for
UFO02685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42825-RA | 106..1069 | 1..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:27 Download gff for
UFO02685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42825-RA | 106..1069 | 1..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:27 Download gff for
UFO02685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10096437..10096968 | 432..949 | 97 | <- | Minus |
| 3L | 10097030..10097202 | 259..431 | 100 | <- | Minus |
| 3L | 10097752..10098009 | 1..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:44 Download gff for
UFO02685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10089537..10090068 | 432..949 | 97 | <- | Minus |
| arm_3L | 10090130..10090302 | 259..431 | 100 | <- | Minus |
| arm_3L | 10090852..10091109 | 1..258 | 98 | | Minus |
