UFO02686.5prime Sequence
905 bp (804 high quality bases) assembled on 2009-01-14
> UFO02686.5prime
CAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGGGTTCTGTG
GCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATCTCGACAGC
TGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAATTTCCCCG
GTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAACCGGAAGAC
TATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGCTATATAGC
GGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGAGAAAATGT
TTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGTACGAATCC
CAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGCGAGGAGGC
TTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCTCATCTACG
GGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCCGTATCGAC
CAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGTCGCGGCAA
GCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGTCACCATCT
CCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCGCCTACGCC
ATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTACTTTGGTGA
GGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTTTGCTGCCA
CTTTGGGTTGTCCGGCTATCCTTTTTTTGTCGAAACACGGCTTTGCCATA
TCCACCCCCATCCGCATGACAGTACAGGCGATGGATCCGCCGGTCCGCGG
ACCTTATGGGCTTGATACCTACCATTCGAGTGGATGGCCACAGAACGTTC
TCCGC
UFO02686.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8199-RA | 1750 | CG8199-RA | 90..977 | 8..894 | 4060 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9556003..9556538 | 77..612 | 2680 | 100 | Plus |
| 3R | 32079331 | 3R | 9556605..9556764 | 613..772 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 9555874..9555943 | 8..77 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:17 has no hits.
UFO02686.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:13 Download gff for
UFO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 80..877 | 8..805 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:55 Download gff for
UFO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..887 | 8..805 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:38 Download gff for
UFO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..887 | 8..805 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:38 Download gff for
UFO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9555874..9555943 | 8..77 | 100 | -> | Plus |
| 3R | 9556004..9556538 | 78..612 | 100 | -> | Plus |
| 3R | 9556605..9556774 | 613..779 | 97 | -> | Plus |
| 3R | 9556887..9556913 | 780..805 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:55 Download gff for
UFO02686.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5381596..5381665 | 8..77 | 100 | -> | Plus |
| arm_3R | 5382327..5382496 | 613..779 | 97 | -> | Plus |
| arm_3R | 5382609..5382635 | 780..805 | 96 | == | Plus |
| arm_3R | 5381726..5382260 | 78..612 | 100 | -> | Plus |
