UFO02687.5prime Sequence
963 bp (840 high quality bases) assembled on 2009-01-14
> UFO02687.5prime
CAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTATATACTCC
TCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTGAAACGACC
GCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTGGCAGGAGT
TCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGGAGGTCACC
GAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCGTACACCAC
GCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCACTGCCGGG
TGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCCGTGGCGAT
GATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGCGACTCGCG
GTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCTCATCCAGT
TCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGTCCTCGCAT
CCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCTCACGTGGA
GATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTACAAGGCTG
GCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGCATCCCTCC
TCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTACGATACTAG
TCGCGGAGGATCAGTGTCAGACGGACATGCTGCCAGGACGAGCTCTGAGT
CGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCAACTACACCTG
CATGCTGGGCAATGAGATTACGGAAGACGTGGTGGTGCATGTGCTGAACG
TGAGGAGCAGCGCATGCAACATGCAACGGAAGCCGCCAAAGCACGCCTCC
CAATGGTGTGTATTTCTAGTGTACGTTGCATCTCCGTCGATCGTAACGAT
GATCGGAATGGCT
UFO02687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr14-RB | 3794 | CG10946-RB | 660..1602 | 9..936 | 4300 | 98.1 | Plus |
| dpr14-RA | 1668 | CG10946-RA | 477..1419 | 9..936 | 4300 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7906500..7906946 | 537..91 | 2235 | 100 | Minus |
| X | 23542271 | X | 7906254..7906427 | 710..537 | 870 | 100 | Minus |
| X | 23542271 | X | 7906045..7906176 | 850..719 | 600 | 97 | Minus |
| X | 23542271 | X | 7907257..7907338 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:08 has no hits.
UFO02687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:43 Download gff for
UFO02687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 439..1393 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:29 Download gff for
UFO02687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1426 | 1..941 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:54 Download gff for
UFO02687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1426 | 1..941 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:54 Download gff for
UFO02687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7906045..7906181 | 715..850 | 97 | <- | Minus |
| X | 7906249..7906426 | 538..714 | 99 | <- | Minus |
| X | 7906500..7906946 | 91..537 | 100 | <- | Minus |
| X | 7907257..7907343 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:29 Download gff for
UFO02687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7801290..7801376 | 1..90 | 96 | | Minus |
| arm_X | 7800078..7800214 | 715..850 | 97 | <- | Minus |
| arm_X | 7800282..7800459 | 538..714 | 99 | <- | Minus |
| arm_X | 7800533..7800979 | 91..537 | 100 | <- | Minus |
