UFO02688.5prime Sequence
920 bp (794 high quality bases) assembled on 2009-01-14
> UFO02688.5prime
CAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGCTACTGCGC
GATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGCAACGATCT
GGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCCAGCGCATG
GCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGTACGACGCA
CGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGCGCTGGCAA
CGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTACACGCAGG
GTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCACTTTGCCG
CCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCCTTTTTGCC
CGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGACACGTTGC
CGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATGAGGTGCCA
TCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAAGACGTCGA
TGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAACTCCGCTGG
TCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAGAGTCCTAC
TTTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGACACGACT
ACCATGACAGTTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAG
GTGGTCGGTTCGGAGCCGACACTGGCCGCGTCTTCACAGCATTCAACTCC
GCCATTGGCCTTTACTCAACAACACATCGAGGACCCATCGATTCACAGTT
TCCTTCGCACAAGCGAAAGCATCGCTTGGAGGACGTCTTTGCATCGTCTT
TGCACAAACCTTACGGCTAT
UFO02688.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp66-RF | 1714 | CG6416-RF | 186..1112 | 9..920 | 4075 | 97.2 | Plus |
| Zasp66-RM | 1554 | CG6416-RM | 186..1104 | 9..913 | 4060 | 97.3 | Plus |
| Zasp66-RK | 1642 | CG6416-RK | 186..1038 | 9..854 | 3925 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8627424..8627730 | 272..578 | 1535 | 100 | Plus |
| 3L | 28110227 | 3L | 8634580..8634785 | 576..781 | 840 | 98.1 | Plus |
| 3L | 28110227 | 3L | 8626960..8627110 | 125..275 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 8626394..8626512 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:14 has no hits.
UFO02688.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:42 Download gff for
UFO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6416-RF | 179..1112 | 1..920 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:23 Download gff for
UFO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RF | 179..1112 | 1..920 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:13 Download gff for
UFO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RF | 179..1112 | 1..920 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:13 Download gff for
UFO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8626961..8627109 | 126..274 | 100 | -> | Plus |
| 3L | 8627427..8627730 | 275..578 | 100 | -> | Plus |
| 3L | 8634583..8634785 | 579..781 | 98 | == | Plus |
| 3L | 8626387..8626510 | 1..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:23 Download gff for
UFO02688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8620061..8620209 | 126..274 | 100 | -> | Plus |
| arm_3L | 8619487..8619610 | 1..125 | 96 | -> | Plus |
| arm_3L | 8620527..8620830 | 275..578 | 100 | -> | Plus |
| arm_3L | 8627683..8627885 | 579..781 | 98 | == | Plus |
