UFO02689.5prime Sequence
1092 bp (987 high quality bases) assembled on 2009-01-14
> UFO02689.5prime
CAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAGAGGCGAAT
CCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCAAGGTCCTT
TACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGGAAGTGGTG
GTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCCGGGAAGAT
GACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGAAAGCTGCT
CAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAATCTCGGCCT
GCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGGACGTGATC
AAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGCTTCTTCTA
TTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAATGGCTCCG
AGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCTGGGATGCT
CTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGGTCCGGCCT
GGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTATTTCGTGG
CCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGAGCCACTAT
AATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACCAAGAAAAG
TCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCGGATTTGTG
CTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGATGCAGGCC
CAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGTGTGGTGGC
CCTTCAGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCACGATCCTCAG
GACGTGCCCTTTTCAGATTTACTGCCCATCTATGAGAGCTAAAACAGATC
TCGGCCATGGCTCAACAGCCTCGTCAGTCTGAGTTTCTGCAGGCGTGATG
CAGGGAACGTGACGCATTGGTGACCACCTCCTTTCGACGTGTCAGAACAC
ATGACGATGAATGAGAAGGGTCCATCTCCGAACTCGCCGCAG
UFO02689.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2616-RB | 1820 | CG2616-RB | 125..1188 | 3..1054 | 4815 | 97.8 | Plus |
| CG2616-RA | 1525 | CG2616-RA | 125..1188 | 3..1054 | 4815 | 97.8 | Plus |
| Shawn-RE | 3255 | CG14209-RE | 1998..2161 | 269..426 | 220 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7722541..7723224 | 3..686 | 3405 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7723701..7724027 | 684..1000 | 1145 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:31:46 has no hits.
UFO02689.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:40 Download gff for
UFO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1188 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:15 Download gff for
UFO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1188 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:13 Download gff for
UFO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1188 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:13 Download gff for
UFO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7722539..7723223 | 1..685 | 99 | -> | Plus |
| 3R | 7723703..7724083 | 686..1054 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:15 Download gff for
UFO02689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3548261..3548945 | 1..685 | 99 | -> | Plus |
| arm_3R | 3549425..3549805 | 686..1054 | 94 | | Plus |
