UFO02691.5prime Sequence
1029 bp (909 high quality bases) assembled on 2009-01-14
> UFO02691.5prime
CAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTG
GGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTG
GGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATT
TCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGC
GGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGG
ACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGT
CGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCC
TACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGGAGGTGT
ACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGG
AGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATT
GTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGT
GATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGT
CATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCT
CGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAG
CGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTCCATGAGCA
CCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGT
TCACCGCTGCGATCGAGTCTGAAGAAGCCGAGACCACGGCCGATCCAACG
TTAGGCATTCAAATCCCGGCTATTCTGGATCCGGAAGCCCCGCCACCTAT
GCGCGCAATGAGCGTGAGAGTCGATCAGACGCCAAGCACCGAGTGCAGCT
TCTAAACATCGTTGGCCGCCGCCAAGTTATTGTCTAATCTATTATAATCA
ATCCTATCCAACTAGCTAGGATCCTGTCT
UFO02691.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1530 | 7..917 | 4425 | 99.2 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1616 | 7..917 | 4425 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089236..18089646 | 903..494 | 1895 | 99 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 399..232 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 124..7 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 231..123 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089948 | 497..395 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:16 has no hits.
UFO02691.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:39 Download gff for
UFO02691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 676..1599 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:15 Download gff for
UFO02691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1618 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:50 Download gff for
UFO02691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1618 | 1..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:50 Download gff for
UFO02691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18090012..18090176 | 232..396 | 100 | <- | Minus |
| 3L | 18090279..18090386 | 124..231 | 100 | <- | Minus |
| 3L | 18090448..18090571 | 1..123 | 97 | | Minus |
| 3L | 18089250..18089642 | 498..888 | 99 | <- | Minus |
| 3L | 18089846..18089946 | 397..497 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:15 Download gff for
UFO02691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18082350..18082742 | 498..888 | 99 | <- | Minus |
| arm_3L | 18082946..18083046 | 397..497 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 232..396 | 100 | <- | Minus |
| arm_3L | 18083379..18083486 | 124..231 | 100 | <- | Minus |
| arm_3L | 18083548..18083671 | 1..123 | 97 | | Minus |
